Literature DB >> 17110925

Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants.

Masaki Endo1, Yuichi Ishikawa, Keishi Osakabe, Shigeki Nakayama, Hidetaka Kaya, Takashi Araki, Kei-ichi Shibahara, Kiyomi Abe, Hiroaki Ichikawa, Lisa Valentine, Barbara Hohn, Seiichi Toki.   

Abstract

Chromatin assembly factor 1 (CAF-1) is involved in nucleo some assembly following DNA replication and nucleotide excision repair. In Arabidopsis thaliana, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. In this study, we asked whether genomic stability is altered in fas1 and fas2 mutants that are lacking CAF-1 activity. Depletion of either subunit increased the frequency of somatic homologous recombination (HR) in planta approximately 40-fold. The frequency of transferred DNA (T-DNA) integration was also elevated. A delay in loading histones onto newly replicated or repaired DNA might make these DNA stretches more accessible, both to repair enzymes and to foreign DNA. Furthermore, fas mutants exhibited increased levels of DNA double-strand breaks, a G2-phase retardation that accelerates endoreduplication, and elevated levels of mRNAs coding for proteins involved in HR-all factors that could also contribute to upregulation of HR frequency in fas mutants.

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Year:  2006        PMID: 17110925      PMCID: PMC1679757          DOI: 10.1038/sj.emboj.7601434

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  72 in total

1.  Stimulation of homologous recombination in plants by expression of the bacterial resolvase ruvC.

Authors:  G Shalev; Y Sitrit; N Avivi-Ragolski; C Lichtenstein; A A Levy
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

Review 2.  De novo nucleosome assembly: new pieces in an old puzzle.

Authors:  A Verreault
Journal:  Genes Dev       Date:  2000-06-15       Impact factor: 11.361

Review 3.  Chromatin assembly during S phase: contributions from histone deposition, DNA replication and the cell division cycle.

Authors:  T Krude; C Keller
Journal:  Cell Mol Life Sci       Date:  2001-05       Impact factor: 9.261

4.  Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrest.

Authors:  Xiaofen Ye; Alexa A Franco; Hidelita Santos; David M Nelson; Paul D Kaufman; Peter D Adams
Journal:  Mol Cell       Date:  2003-02       Impact factor: 17.970

5.  T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.

Authors:  Véronique Brunaud; Sandrine Balzergue; Bertrand Dubreucq; Sébastien Aubourg; Franck Samson; Stéphanie Chauvin; Nicole Bechtold; Corinne Cruaud; Richard DeRose; Georges Pelletier; Loïc Lepiniec; Michel Caboche; Alain Lecharny
Journal:  EMBO Rep       Date:  2002-11-21       Impact factor: 8.807

6.  The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants.

Authors:  Angela Kirik; Ales Pecinka; Edelgard Wendeler; Bernd Reiss
Journal:  Plant Cell       Date:  2006-09-15       Impact factor: 11.277

7.  The INO80 protein controls homologous recombination in Arabidopsis thaliana.

Authors:  Olivier Fritsch; Giovanna Benvenuto; Chris Bowler; Jean Molinier; Barbara Hohn
Journal:  Mol Cell       Date:  2004-11-05       Impact factor: 17.970

8.  Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability.

Authors:  Kyungjae Myung; Vincent Pennaneach; Ellen S Kats; Richard D Kolodner
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-15       Impact factor: 11.205

9.  Stepwise assembly of chromatin during DNA replication in vitro.

Authors:  S Smith; B Stillman
Journal:  EMBO J       Date:  1991-04       Impact factor: 11.598

10.  DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1.

Authors:  Grzegorz Ira; Achille Pellicioli; Alitukiriza Balijja; Xuan Wang; Simona Fiorani; Walter Carotenuto; Giordano Liberi; Debra Bressan; Lihong Wan; Nancy M Hollingsworth; James E Haber; Marco Foiani
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

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  73 in total

1.  Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

Authors:  Ales Pecinka; Huy Q Dinh; Tuncay Baubec; Marisa Rosa; Nicole Lettner; Ortrun Mittelsten Scheid
Journal:  Plant Cell       Date:  2010-09-28       Impact factor: 11.277

2.  NAP1 family histone chaperones are required for somatic homologous recombination in Arabidopsis.

Authors:  Juan Gao; Yan Zhu; Wangbin Zhou; Jean Molinier; Aiwu Dong; Wen-Hui Shen
Journal:  Plant Cell       Date:  2012-04-24       Impact factor: 11.277

3.  ddm1 plants are sensitive to methyl methane sulfonate and NaCl stresses and are deficient in DNA repair.

Authors:  Youli Yao; Andriy Bilichak; Andrey Golubov; Igor Kovalchuk
Journal:  Plant Cell Rep       Date:  2012-04-27       Impact factor: 4.570

Review 4.  DNA Damage Repair in the Context of Plant Chromatin.

Authors:  Mattia Donà; Ortrun Mittelsten Scheid
Journal:  Plant Physiol       Date:  2015-06-18       Impact factor: 8.340

5.  Targeted DNA insertion in plants.

Authors:  Oliver Xiaoou Dong; Pamela C Ronald
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-30       Impact factor: 11.205

6.  In planta somatic homologous recombination assay revisited: a successful and versatile, but delicate tool.

Authors:  Holger Puchta; Barbara Hohn
Journal:  Plant Cell       Date:  2012-11-09       Impact factor: 11.277

7.  AtMMS21, an SMC5/6 complex subunit, is involved in stem cell niche maintenance and DNA damage responses in Arabidopsis roots.

Authors:  Panglian Xu; Dongke Yuan; Ming Liu; Chunxin Li; Yiyang Liu; Shengchun Zhang; Nan Yao; Chengwei Yang
Journal:  Plant Physiol       Date:  2013-02-20       Impact factor: 8.340

8.  The ATM-dependent DNA damage response acts as an upstream trigger for compensation in the fas1 mutation during Arabidopsis leaf development.

Authors:  Tetsuya Hisanaga; Ali Ferjani; Gorou Horiguchi; Naoko Ishikawa; Ushio Fujikura; Minoru Kubo; Taku Demura; Hiroo Fukuda; Takashi Ishida; Keiko Sugimoto; Hirokazu Tsukaya
Journal:  Plant Physiol       Date:  2013-04-24       Impact factor: 8.340

9.  Transgenerational stress memory is not a general response in Arabidopsis.

Authors:  Ales Pecinka; Marisa Rosa; Adam Schikora; Marc Berlinger; Heribert Hirt; Christian Luschnig; Ortrun Mittelsten Scheid
Journal:  PLoS One       Date:  2009-04-21       Impact factor: 3.240

10.  A link among DNA replication, recombination, and gene expression revealed by genetic and genomic analysis of TEBICHI gene of Arabidopsis thaliana.

Authors:  Soichi Inagaki; Kenzo Nakamura; Atsushi Morikami
Journal:  PLoS Genet       Date:  2009-08-21       Impact factor: 5.917

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