Literature DB >> 17107933

No promoter left behind: global circadian gene expression in cyanobacteria.

Mark A Woelfle1, Carl Hirschie Johnson.   

Abstract

Prokaryotic cyanobacteria express robust circadian (daily) rhythms under the control of a clock system that appears to be similar to those of eukaryotes in many ways. On the other hand, the KaiABC-based core cyanobacterial clockwork is clearly different from the transcription-translation feedback loop model of eukaryotic clocks in that the cyanobacterial clock system regulates gene expression patterns globally, and specific clock gene promoters are not essential in mediating the circadian feedback loop. A novel model, the oscilloid model, proposes that the KaiABC oscillator ultimately mediates rhythmic changes in the status of the cyanobacterial chromosome, and these topological changes underlie the global rhythms of transcription. The authors suggest that this model represents one of several possible modes of regulating gene expression by circadian clocks, even those of eukaryotes.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17107933      PMCID: PMC3431602          DOI: 10.1177/0748730406294418

Source DB:  PubMed          Journal:  J Biol Rhythms        ISSN: 0748-7304            Impact factor:   3.182


  63 in total

1.  A kaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria.

Authors:  H Iwasaki; S B Williams; Y Kitayama; M Ishiura; S S Golden; T Kondo
Journal:  Cell       Date:  2000-04-14       Impact factor: 41.582

2.  Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria.

Authors:  T Nishiwaki; H Iwasaki; M Ishiura; T Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

3.  Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.

Authors:  S L Harmer; J B Hogenesch; M Straume; H S Chang; B Han; T Zhu; X Wang; J A Kreps; S A Kay
Journal:  Science       Date:  2000-12-15       Impact factor: 47.728

4.  Genes controlling circadian rhythm are widely distributed in cyanobacteria.

Authors:  J Lorne; J Scheffer; A Lee; M Painter; V P Miao
Journal:  FEMS Microbiol Lett       Date:  2000-08-15       Impact factor: 2.742

5.  Circadian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus.

Authors:  Ruth A Akhtar; Akhilesh B Reddy; Elizabeth S Maywood; Jonathan D Clayton; Verdun M King; Andrew G Smith; Timothy W Gant; Michael H Hastings; Charalambos P Kyriacou
Journal:  Curr Biol       Date:  2002-04-02       Impact factor: 10.834

6.  cpmA, a gene involved in an output pathway of the cyanobacterial circadian system.

Authors:  M Katayama; N F Tsinoremas; T Kondo; S S Golden
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

7.  Circadian rhythms in rapidly dividing cyanobacteria.

Authors:  T Kondo; T Mori; N V Lebedeva; S Aoki; M Ishiura; S S Golden
Journal:  Science       Date:  1997-01-10       Impact factor: 47.728

8.  Genome-wide transcriptional orchestration of circadian rhythms in Drosophila.

Authors:  Hiroki R Ueda; Akira Matsumoto; Miho Kawamura; Masamitsu Iino; Teiichi Tanimura; Seiichi Hashimoto
Journal:  J Biol Chem       Date:  2002-02-19       Impact factor: 5.157

9.  Circadian expression of the dnaK gene in the cyanobacterium Synechocystis sp. strain PCC 6803.

Authors:  S Aoki; T Kondo; M Ishiura
Journal:  J Bacteriol       Date:  1995-10       Impact factor: 3.490

10.  Oscillating behavior of carbohydrate granule formation and dinitrogen fixation in the cyanobacterium Cyanothece sp. strain ATCC 51142.

Authors:  M A Schneegurt; D M Sherman; S Nayar; L A Sherman
Journal:  J Bacteriol       Date:  1994-03       Impact factor: 3.490

View more
  22 in total

1.  Circadian rhythms of superhelical status of DNA in cyanobacteria.

Authors:  Mark A Woelfle; Yao Xu; Ximing Qin; Carl Hirschie Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

Review 2.  Probing the relative importance of molecular oscillations in the circadian clock.

Authors:  Xiangzhong Zheng; Amita Sehgal
Journal:  Genetics       Date:  2008-03       Impact factor: 4.562

3.  Nuclear envelope regulates the circadian clock.

Authors:  Luoying Zhang; Louis J Ptáčk; Ying-Hui Fu
Journal:  Nucleus       Date:  2015-03-06       Impact factor: 4.197

Review 4.  Circadian Oscillators: Around the Transcription-Translation Feedback Loop and on to Output.

Authors:  Jennifer M Hurley; Jennifer J Loros; Jay C Dunlap
Journal:  Trends Biochem Sci       Date:  2016-08-03       Impact factor: 13.807

Review 5.  Circadian clocks and energy metabolism.

Authors:  Gencer Sancar; Michael Brunner
Journal:  Cell Mol Life Sci       Date:  2014-02-12       Impact factor: 9.261

Review 6.  Molecular genetic analysis of circadian timekeeping in Drosophila.

Authors:  Paul E Hardin
Journal:  Adv Genet       Date:  2011       Impact factor: 1.944

Review 7.  Simplicity and complexity in the cyanobacterial circadian clock mechanism.

Authors:  Guogang Dong; Yong-Ick Kim; Susan S Golden
Journal:  Curr Opin Genet Dev       Date:  2010-10-09       Impact factor: 5.578

8.  The structural code of cyanobacterial genomes.

Authors:  Robert Lehmann; Rainer Machné; Hanspeter Herzel
Journal:  Nucleic Acids Res       Date:  2014-07-23       Impact factor: 16.971

9.  Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes.

Authors:  Jana Stöckel; Eric A Welsh; Michelle Liberton; Rangesh Kunnvakkam; Rajeev Aurora; Himadri B Pakrasi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-21       Impact factor: 11.205

Review 10.  Dopamine and aging: intersecting facets.

Authors:  C David Rollo
Journal:  Neurochem Res       Date:  2008-10-08       Impact factor: 3.996

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.