Literature DB >> 1710356

Translational frameshifting in the Escherichia coli dnaX gene in vitro.

Z Tsuchihashi1.   

Abstract

Production of the gamma subunit of Escherichia coli DNA polymerase III holoenzyme is dependent on a very efficient translational frameshif in the dnaX gene. I used an E. coli in vitro translation system to analyze the mechanism of this frameshifting event. In this system, gamma was produced almost to the same extent as the inframe translation product, tau, suggesting that efficient frameshifting was reproduced in vitro. Coupling with transcription was not necessary for frameshifting. Addition of purified tau or gamma had no effect on the frameshifting process suggesting the absence of direct feedback regulation. By use of mutant genes, a strong pausing site was identified at or very close to the frameshift site. This pausing was apparently caused by a potential stem-loop structure which was previously shown to enhance frameshifting. Thus, enhancement of frameshifting by this putative stem-loop seems to be mediated by the translation pausing at the frameshift site. Despite the apparent structural similarity of the dnaX frameshift site to that of the eukaryotic retroviral genes, dnaX mRNA synthesized in vitro failed to direct the production of gamma in eukaryotic translation systems. This suggests that frameshifting in the dnaX gene depends on components specific to the E. coli translation system.

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Year:  1991        PMID: 1710356      PMCID: PMC329457          DOI: 10.1093/nar/19.9.2457

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

1.  ATP interactions of the tau and gamma subunits of DNA polymerase III holoenzyme of Escherichia coli.

Authors:  Z Tsuchihashi; A Kornberg
Journal:  J Biol Chem       Date:  1989-10-25       Impact factor: 5.157

2.  Frameshifting is required for production of the transposase encoded by insertion sequence 1.

Authors:  Y Sekine; E Ohtsubo
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

3.  Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon.

Authors:  J J Clare; M Belcourt; P J Farabaugh
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

4.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

5.  The dnaX gene encodes the DNA polymerase III holoenzyme tau subunit, precursor of the gamma subunit, the dnaZ gene product.

Authors:  M Kodaira; S B Biswas; A Kornberg
Journal:  Mol Gen Genet       Date:  1983

6.  E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent.

Authors:  R B Weiss; D M Dunn; M Shuh; J F Atkins; R F Gesteland
Journal:  New Biol       Date:  1989-11

7.  Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme.

Authors:  Z Tsuchihashi; A Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1990-04       Impact factor: 11.205

8.  Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon.

Authors:  S Yokoyama; T Watanabe; K Murao; H Ishikura; Z Yamaizumi; S Nishimura; T Miyazawa
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

9.  Codon reading and translational error. Reading of the glutamine and lysine codons during protein synthesis in vitro.

Authors:  F Lustig; P Elias; T Axberg; T Samuelsson; I Tittawella; U Lagerkvist
Journal:  J Biol Chem       Date:  1981-03-25       Impact factor: 5.157

Review 10.  Ribosome gymnastics--degree of difficulty 9.5, style 10.0.

Authors:  J F Atkins; R B Weiss; R F Gesteland
Journal:  Cell       Date:  1990-08-10       Impact factor: 41.582

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  40 in total

1.  Programmed ribosomal frameshifting: much ado about knotting!

Authors:  S L Alam; J F Atkins; R F Gesteland
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

Review 2.  Translational control of viral gene expression in eukaryotes.

Authors:  M Gale; S L Tan; M G Katze
Journal:  Microbiol Mol Biol Rev       Date:  2000-06       Impact factor: 11.056

3.  Ribosome hopping and translational frameshifting are inadequate alternatives to translational attenuation in cat-86 regulation.

Authors:  E J Rogers; N P Ambulos; P S Lovett
Journal:  J Bacteriol       Date:  1991-12       Impact factor: 3.490

4.  The tri-frame model.

Authors:  Elsje Pienaar; Hendrik J Viljoen
Journal:  J Theor Biol       Date:  2007-12-14       Impact factor: 2.691

5.  An analysis of sequences stimulating frameshifting in the decoding of gene 10 of bacteriophage T7.

Authors:  B G Condron; R F Gesteland; J F Atkins
Journal:  Nucleic Acids Res       Date:  1991-10-25       Impact factor: 16.971

Review 6.  Programmed translational frameshifting.

Authors:  P J Farabaugh
Journal:  Microbiol Rev       Date:  1996-03

7.  Co-temporal Force and Fluorescence Measurements Reveal a Ribosomal Gear Shift Mechanism of Translation Regulation by Structured mRNAs.

Authors:  Varsha P Desai; Filipp Frank; Antony Lee; Maurizio Righini; Laura Lancaster; Harry F Noller; Ignacio Tinoco; Carlos Bustamante
Journal:  Mol Cell       Date:  2019-08-27       Impact factor: 17.970

8.  Ribosomal -1 frameshifting during decoding of Bacillus subtilis cdd occurs at the sequence CGA AAG.

Authors:  N Mejlhede; J F Atkins; J Neuhard
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

9.  Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli.

Authors:  J Sipley; E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

Review 10.  Functions of the gene products of Escherichia coli.

Authors:  M Riley
Journal:  Microbiol Rev       Date:  1993-12
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