Literature DB >> 17103086

PRINS and C-PRINS: promising tools for the physical mapping of the lupin genome.

Anna Kaczmarek1, Barbara Naganowska, Bogdan Wolko.   

Abstract

Two molecular cytogenetics methods, PRINS (primed in situ DNA labeling) and C-PRINS (cycling PRINS), were optimized for the physical mapping of several types of DNA sequences on the mitotic chromosomes of the narrow-leafed lupin (Lupinus angustifolius L.). The fragment of the FokI element from Vicia faba was localised by indirect PRINS reaction. Two other sequences, fragments of the coding sequences of L. luteus and of L. angustifolius, were localised by indirect C-PRINS. These techniques are faster and more sensitive than FISH, and they allowed the mapping of short DNA fragments. The data obtained shows that both types of PRINS are valuable tools for chromosome identification in lupin.

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Year:  2006        PMID: 17103086      PMCID: PMC6275731          DOI: 10.2478/s11658-006-0056-9

Source DB:  PubMed          Journal:  Cell Mol Biol Lett        ISSN: 1425-8153            Impact factor:   5.787


  16 in total

1.  Localisation of DNA sequences on plant chromosomes using PRINS and C-PRINS.

Authors:  M Kubaláková; J Vrána; J Cíhalíková; M A Lysák; J Dolezel
Journal:  Methods Cell Sci       Date:  2001

2.  Physical mapping of 18S-25S rDNA and 5S rDNA in Lupinus via fluorescent in situ hybridization.

Authors:  Barbara Naganowska; Anna Zielińska
Journal:  Cell Mol Biol Lett       Date:  2002       Impact factor: 5.787

3.  Localisation of rDNA in the Lupinus genome during the cell cycle.

Authors:  Barbara Naganowska; Anna Zielińska
Journal:  J Appl Genet       Date:  2004       Impact factor: 3.240

4.  The bacterial artificial chromosome (BAC) library of the narrow-leafed lupin (Lupinus angustifolius L.).

Authors:  Andrzej Kasprzak; Jan Safár; Jaroslav Janda; Jaroslav Dolezel; Bogdan Wolko; Barbara Naganowska
Journal:  Cell Mol Biol Lett       Date:  2006       Impact factor: 5.787

5.  Primer-induced in situ hybridization to plant chromosomes.

Authors:  S Abbo; T E Miller; I P King
Journal:  Genome       Date:  1993-10       Impact factor: 2.166

6.  Direct chromosome mapping of plant genes by in situ polymerase chain reaction (in situ PCR).

Authors:  Y Mukai; R Appels
Journal:  Chromosome Res       Date:  1996-08       Impact factor: 5.239

7.  Sequence analysis of Vicia faba repeated DNA, the FokI repeat element.

Authors:  A Kato; K Yakura; S Tanifuji
Journal:  Nucleic Acids Res       Date:  1984-08-24       Impact factor: 16.971

8.  Direct detection of disomy in human sperm by the PRINS technique.

Authors:  F Pellestor; I Quennesson; L Coignet; A Girardet; B Andréo; J P Charlieu
Journal:  Hum Genet       Date:  1996-01       Impact factor: 4.132

9.  Oligonucleotide-primed in situ DNA synthesis (PRINS): a method for chromosome mapping, banding, and investigation of sequence organization.

Authors:  J Gosden; D Hanratty; J Starling; J Fantes; A Mitchell; D Porteous
Journal:  Cytogenet Cell Genet       Date:  1991

10.  Molecular cytogenetic analysis of genome structure in Lupinus angustifolius and Lupinus cosentinii.

Authors:  Inga Hajdera; Dorota Siwinska; Robert Hasterok; Jolanta Maluszynska
Journal:  Theor Appl Genet       Date:  2003-10-02       Impact factor: 5.699

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  4 in total

1.  Identification and functional analysis of PCNA1 and PCNA-like1 genes of Phaseolus coccineus.

Authors:  Wojciech Strzalka; Anna Kaczmarek; Barbara Naganowska; Alicja Ziemienowicz
Journal:  J Exp Bot       Date:  2009-12-10       Impact factor: 6.992

2.  Karyotyping of the narrow-leafed lupin (Lupinus angustifolius L.) by using FISH, PRINS and computer measurements of chromosomes.

Authors:  A Kaczmarek; B Naganowska; B Wolko
Journal:  J Appl Genet       Date:  2009       Impact factor: 3.240

3.  Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing.

Authors:  Ling-Ling Gao; James K Hane; Lars G Kamphuis; Rhonda Foley; Bu-Jun Shi; Craig A Atkins; Karam B Singh
Journal:  BMC Genomics       Date:  2011-10-21       Impact factor: 3.969

4.  Comparative genomics of Lupinus angustifolius gene-rich regions: BAC library exploration, genetic mapping and cytogenetics.

Authors:  Michał Książkiewicz; Katarzyna Wyrwa; Anna Szczepaniak; Sandra Rychel; Karolina Majcherkiewicz; Łucja Przysiecka; Wojciech Karlowski; Bogdan Wolko; Barbara Naganowska
Journal:  BMC Genomics       Date:  2013-02-05       Impact factor: 3.969

  4 in total

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