Literature DB >> 16847554

The bacterial artificial chromosome (BAC) library of the narrow-leafed lupin (Lupinus angustifolius L.).

Andrzej Kasprzak1, Jan Safár, Jaroslav Janda, Jaroslav Dolezel, Bogdan Wolko, Barbara Naganowska.   

Abstract

The narrow-leafed lupin possesses valuable traits for environment-friendly agriculture and for the production of unconventional agricultural products. Despite various genetic and environmental studies, the breeding of improved cultivars has been slow due to the limited knowledge of its genomic structure. Further advances in genomics require, among other things, the availability of a genomic DNA library with large inserts. We report here on the construction of the first DNA library cloned in a BAC (bacterial artificial chromosome) vector from diploid Lupinus angustifolius L. cv. Sonet. The high molecular weight DNA used for its preparation was isolated from interphase nuclei that were purified by flow cytometry. The library comprises 55,296 clones and is ordered in 144x384-well microtitre plates. With an average insert size of 100 kb, the library represents six haploid genome equivalents. Thanks to the purification of the nuclei by flow cytometry, contamination with chloroplast DNA and mitochondrial DNA was negligible. The availability of a BAC library opens avenues for the development of a physical contig map and positional gene cloning, as well as for the analysis of the plant's genome structure and evolution.

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Year:  2006        PMID: 16847554      PMCID: PMC6472840          DOI: 10.2478/s11658-006-0033-3

Source DB:  PubMed          Journal:  Cell Mol Biol Lett        ISSN: 1425-8153            Impact factor:   5.787


  25 in total

1.  New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin).

Authors:  Magdalena Kroc; Grzegorz Koczyk; Wojciech Święcicki; Andrzej Kilian; Matthew N Nelson
Journal:  Theor Appl Genet       Date:  2014-03-15       Impact factor: 5.699

2.  Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus.

Authors:  Matthew N Nelson; Paula M Moolhuijzen; Jeffrey G Boersma; Magdalena Chudy; Karolina Lesniewska; Matthew Bellgard; Richard P Oliver; Wojciech Swiecicki; Bogdan Wolko; Wallace A Cowling; Simon R Ellwood
Journal:  DNA Res       Date:  2010-02-04       Impact factor: 4.458

3.  Karyotyping of the narrow-leafed lupin (Lupinus angustifolius L.) by using FISH, PRINS and computer measurements of chromosomes.

Authors:  A Kaczmarek; B Naganowska; B Wolko
Journal:  J Appl Genet       Date:  2009       Impact factor: 3.240

4.  The genome sequence of the North-European cucumber (Cucumis sativus L.) unravels evolutionary adaptation mechanisms in plants.

Authors:  Rafał Wóycicki; Justyna Witkowicz; Piotr Gawroński; Joanna Dąbrowska; Alexandre Lomsadze; Magdalena Pawełkowicz; Ewa Siedlecka; Kohei Yagi; Wojciech Pląder; Anna Seroczyńska; Mieczysław Śmiech; Wojciech Gutman; Katarzyna Niemirowicz-Szczytt; Grzegorz Bartoszewski; Norikazu Tagashira; Yoshikazu Hoshi; Mark Borodovsky; Stanisław Karpiński; Stefan Malepszy; Zbigniew Przybecki
Journal:  PLoS One       Date:  2011-07-28       Impact factor: 3.240

Review 5.  Bacterial artificial chromosome libraries of pulse crops: characteristics and applications.

Authors:  Kangfu Yu
Journal:  J Biomed Biotechnol       Date:  2011-07-26

6.  Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing.

Authors:  Ling-Ling Gao; James K Hane; Lars G Kamphuis; Rhonda Foley; Bu-Jun Shi; Craig A Atkins; Karam B Singh
Journal:  BMC Genomics       Date:  2011-10-21       Impact factor: 3.969

7.  Structure, expression profile and phylogenetic inference of chalcone isomerase-like genes from the narrow-leafed lupin (Lupinus angustifolius L.) genome.

Authors:  Łucja Przysiecka; Michał Książkiewicz; Bogdan Wolko; Barbara Naganowska
Journal:  Front Plant Sci       Date:  2015-04-21       Impact factor: 5.753

8.  Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers.

Authors:  Lars G Kamphuis; James K Hane; Matthew N Nelson; Lingling Gao; Craig A Atkins; Karam B Singh
Journal:  Plant Biotechnol J       Date:  2014-07-24       Impact factor: 9.803

9.  Remnants of the Legume Ancestral Genome Preserved in Gene-Rich Regions: Insights from Lupinus angustifolius Physical, Genetic, and Comparative Mapping.

Authors:  Michał Książkiewicz; Andrzej Zielezinski; Katarzyna Wyrwa; Anna Szczepaniak; Sandra Rychel; Wojciech Karlowski; Bogdan Wolko; Barbara Naganowska
Journal:  Plant Mol Biol Report       Date:  2015       Impact factor: 1.595

10.  Comparative genomics of Lupinus angustifolius gene-rich regions: BAC library exploration, genetic mapping and cytogenetics.

Authors:  Michał Książkiewicz; Katarzyna Wyrwa; Anna Szczepaniak; Sandra Rychel; Karolina Majcherkiewicz; Łucja Przysiecka; Wojciech Karlowski; Bogdan Wolko; Barbara Naganowska
Journal:  BMC Genomics       Date:  2013-02-05       Impact factor: 3.969

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