Literature DB >> 17090672

Electrostatic origin of the genome packing in viruses.

Vladimir A Belyi1, M Muthukumar.   

Abstract

Many ssRNA/ssDNA viruses bind their genome by highly basic semiflexible peptide arms of capsid proteins. Here, we show that nonspecific electrostatic interactions control both the length of the genome and genome conformations. Analysis of available experimental data shows that the genome length is linear in the net charge on the capsid peptide arms, irrespective of the actual amino acid sequence, with a proportionality coefficient of 1.61 +/- 0.03. This ratio is conserved across all ssRNA/ssDNA viruses with highly basic peptide arms, and is different from the one-to-one charge balance expected of specific binding. Genomic nucleotides are predicted to occupy a radially symmetric spherical shell detached from the viral capsid, in agreement with experimental data.

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Year:  2006        PMID: 17090672      PMCID: PMC1859905          DOI: 10.1073/pnas.0608311103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  Methods for reconstructing density maps of "single" particles from cryoelectron micrographs to subnanometer resolution.

Authors:  J F Conway; A C Steven
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses.

Authors:  V S Reddy; P Natarajan; B Okerberg; K Li; K V Damodaran; R T Morton; C L Brooks; J E Johnson
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

3.  PURIFICATION OF BARLEY YELLOW DWARF VIRUS.

Authors:  W F ROCHOW; M K BRAKKE
Journal:  Virology       Date:  1964-11       Impact factor: 3.616

4.  Identification of a region in the Sindbis virus nucleocapsid protein that is involved in specificity of RNA encapsidation.

Authors:  K E Owen; R J Kuhn
Journal:  J Virol       Date:  1996-05       Impact factor: 5.103

5.  Sindbis virus replicons and Sindbis virus: assembly of chimeras and of particles deficient in virus RNA.

Authors:  I Frolov; E Frolova; S Schlesinger
Journal:  J Virol       Date:  1997-04       Impact factor: 5.103

Review 6.  The molecular biology of the hepatitis B viruses.

Authors:  D Ganem; H E Varmus
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

7.  Hepatitis core antigen produced in Escherichia coli: subunit composition, conformational analysis, and in vitro capsid assembly.

Authors:  P T Wingfield; S J Stahl; R W Williams; A C Steven
Journal:  Biochemistry       Date:  1995-04-18       Impact factor: 3.162

8.  Folding and assembly of hepatitis B virus core protein: a new model proposal.

Authors:  R Bringas
Journal:  J Struct Biol       Date:  1997-04       Impact factor: 2.867

9.  The core protein of alphaviruses. 2. Purification of peptides and complete amino-acid sequence of Sindbis virus core protein.

Authors:  U Boege; G Wengler; B Wittmann-Liebold
Journal:  Eur J Biochem       Date:  1983-06-15

10.  Characterization of cucumber mosaic virus. V. Cell-to-cell movement requires capsid protein but not virions.

Authors:  I B Kaplan; L Zhang; P Palukaitis
Journal:  Virology       Date:  1998-07-05       Impact factor: 3.616

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  86 in total

1.  Encapsulation of a polyelectrolyte chain by an oppositely charged spherical surface.

Authors:  Jiafang Wang; M Muthukumar
Journal:  J Chem Phys       Date:  2011-11-21       Impact factor: 3.488

2.  Langevin dynamics simulation of polymer-assisted virus-like assembly.

Authors:  J P Mahalik; M Muthukumar
Journal:  J Chem Phys       Date:  2012-04-07       Impact factor: 3.488

3.  Thermodynamic basis for the genome to capsid charge relationship in viral encapsidation.

Authors:  Christina L Ting; Jianzhong Wu; Zhen-Gang Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

4.  Mechanisms of capsid assembly around a polymer.

Authors:  Aleksandr Kivenson; Michael F Hagan
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

5.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

6.  Ejection dynamics of polymeric chains from viral capsids: effect of solvent quality.

Authors:  I Ali; D Marenduzzo; J M Yeomans
Journal:  Biophys J       Date:  2008-01-11       Impact factor: 4.033

7.  Controlling viral capsid assembly with templating.

Authors:  Michael F Hagan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-05-08

8.  A theory for viral capsid assembly around electrostatic cores.

Authors:  Michael F Hagan
Journal:  J Chem Phys       Date:  2009-03-21       Impact factor: 3.488

9.  Size regulation of ss-RNA viruses.

Authors:  Roya Zandi; Paul van der Schoot
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

10.  Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size.

Authors:  Yufang Hu; Roya Zandi; Adriana Anavitarte; Charles M Knobler; William M Gelbart
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

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