Literature DB >> 17089916

NORs and their transcription competence during the cell cycle.

E Smirnov1, M Kalmárová, K Koberna, Z Zemanová, J Malínský, M Masata, Z Cvacková, K Michalová, I Raska.   

Abstract

In human cells ribosomal genes are organized as clusters, NORs, situated on the short arms of acrocentric chromosomes. It was found that essential components of the RNA polymerase I transcription machinery, including UBF, can be detected on some NORs, termed "competent" NORs, during mitosis. The competent NORs are believed to be transcriptionally active during interphase. However, since individual NORs were not observed in the cell nucleus, their interphase status remains unclear. To address this problem, we detected the competent NORs by two commonly used methods, UBF immunofluorescence and silver staining, and combined them with FISH for visualization of rDNA and/or specific chromosomes. We found that the numbers of competent NORs on specific chromosomes were largely conserved in the subsequent cell cycles, with certain NOR-bearing homologues displaying a very stable pattern of competence. Importantly, those and only those NORs that were loaded with UBF incorporated bromo-uridine in metaphase after stimulation with roscovitine and in telophase, suggesting that competent and only competent NORs contain ribosomal genes transcriptionally active during interphase. Applying premature chromosome condensation with calyculin A, we visualized individual NORs in interphase cells, and found the same pattern of competence as observed in the mitotic chromosomes.

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Year:  2006        PMID: 17089916      PMCID: PMC2446406     

Source DB:  PubMed          Journal:  Folia Biol (Praha)        ISSN: 0015-5500            Impact factor:   0.906


  55 in total

Review 1.  Structural and functional aspects of nucleolar organizer regions (NORs) of human chromosomes.

Authors:  K A Babu; R S Verma
Journal:  Int Rev Cytol       Date:  1985

2.  Relationship between the number and function of human ribosomal genes.

Authors:  A de Capoa; M P Felli; A Baldini; M Rocchi; N Archidiacono; C Aleixandre; O J Miller; D A Miller
Journal:  Hum Genet       Date:  1988-08       Impact factor: 4.132

3.  On the position of nucleolus organizer regions (NORs) in interphase nuclei. Studies with a new, non-autoradiographic in situ hybridization method.

Authors:  F Wachtler; A H Hopman; J Wiegant; H G Schwarzacher
Journal:  Exp Cell Res       Date:  1986-11       Impact factor: 3.905

4.  Purification and characterization of a transcription factor that confers promoter specificity to human RNA polymerase I.

Authors:  R M Learned; S Cordes; R Tjian
Journal:  Mol Cell Biol       Date:  1985-06       Impact factor: 4.272

5.  Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1-step method.

Authors:  W M Howell; D A Black
Journal:  Experientia       Date:  1980-08-15

6.  Presence of a chromatid core in mitotic and meiotic chromosomes of grasshoppers.

Authors:  J S Rufas; G Giménez-Martín; P Esponda
Journal:  Cell Biol Int Rep       Date:  1982-03

7.  Structure and variation of human ribosomal DNA: molecular analysis of cloned fragments.

Authors:  J M Erickson; C L Rushford; D J Dorney; G N Wilson; R D Schmickel
Journal:  Gene       Date:  1981-12       Impact factor: 3.688

8.  The number of nucleolar silver-stained granules of active nucleolus organizer regions in mitotic and interphase cells of rat Yoshida and Zajdela ascitic tumors.

Authors:  K Smetana; Z Likovský
Journal:  Virchows Arch B Cell Pathol Incl Mol Pathol       Date:  1982-08

9.  Human NORs show correlation between transcriptional activity, DNase I sensitivity, and hypomethylation.

Authors:  M Ferraro; G Prantera
Journal:  Cytogenet Cell Genet       Date:  1988

10.  Description of a chromosome replication unit in individual prematurely condensed human S-phase chromosomes.

Authors:  H Hameister; K Sperling
Journal:  Chromosoma       Date:  1984       Impact factor: 4.316

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  11 in total

Review 1.  Nucleolar DNA: the host and the guests.

Authors:  E Smirnov; D Cmarko; T Mazel; M Hornáček; I Raška
Journal:  Histochem Cell Biol       Date:  2016-02-04       Impact factor: 4.304

2.  Reproduction of the FC/DFC units in nucleoli.

Authors:  Evgeny Smirnov; Matúš Hornáček; Lubomír Kováčik; Tomáš Mazel; Adam Schröfel; Silvie Svidenská; Magdalena Skalníková; Eva Bartová; Dušan Cmarko; Ivan Raška
Journal:  Nucleus       Date:  2016-03-02       Impact factor: 4.197

3.  Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus.

Authors:  Andrew J Fritz; A Rasim Barutcu; Lori Martin-Buley; André J van Wijnen; Sayyed K Zaidi; Anthony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  J Cell Biochem       Date:  2016-01       Impact factor: 4.429

4.  Remodeling of three-dimensional organization of the nucleus during terminal keratinocyte differentiation in the epidermis.

Authors:  Michal R Gdula; Krzysztof Poterlowicz; Andrei N Mardaryev; Andrey A Sharov; Yonghong Peng; Michael Y Fessing; Vladimir A Botchkarev
Journal:  J Invest Dermatol       Date:  2013-02-13       Impact factor: 8.551

5.  Non-Random Patterns in the Distribution of NOR-Bearing Chromosome Territories in Human Fibroblasts: A Network Model of Interactions.

Authors:  Artem Pliss; Andrew J Fritz; Branislav Stojkovic; Hu Ding; Lopamudra Mukherjee; Sambit Bhattacharya; Jinhui Xu; Ronald Berezney
Journal:  J Cell Physiol       Date:  2015-02       Impact factor: 6.384

6.  Positioning of the NOR-bearing chromosomes in relation to nucleoli in daughter cells after mitosis.

Authors:  M Kalmárová; E Smirnov; L Kováčik; A Popov; I Raska
Journal:  Physiol Res       Date:  2008       Impact factor: 1.881

7.  Chromatin position in human HepG2 cells: although being non-random, significantly changed in daughter cells.

Authors:  Zuzana Cvacková; Martin Masata; David Stanĕk; Helena Fidlerová; Ivan Raska
Journal:  J Struct Biol       Date:  2008-11-12       Impact factor: 2.867

8.  Conditional inactivation of Upstream Binding Factor reveals its epigenetic functions and the existence of a somatic nucleolar precursor body.

Authors:  Nourdine Hamdane; Victor Y Stefanovsky; Michel G Tremblay; Attila Németh; Eric Paquet; Frédéric Lessard; Elaine Sanij; Ross Hannan; Tom Moss
Journal:  PLoS Genet       Date:  2014-08-14       Impact factor: 5.917

9.  Positioning of NORs and NOR-bearing chromosomes in relation to nucleoli.

Authors:  Markéta Kalmárová; Evgeny Smirnov; Martin Masata; Karel Koberna; Anna Ligasová; Alexey Popov; Ivan Raska
Journal:  J Struct Biol       Date:  2007-07-12       Impact factor: 2.867

10.  Asymmetrical distribution of the transcriptionally competent NORs in mitosis.

Authors:  Markéta Kalmárová; Lubomír Kovácik; Alexey Popov; Sánchez Pilar Testillano; Evgeny Smirnov
Journal:  J Struct Biol       Date:  2008-04-14       Impact factor: 2.867

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