Literature DB >> 17086496

Modeling intercellular interactions in early Mycobacterium infection.

Christina Warrender1, Stephanie Forrest, Frederick Koster.   

Abstract

Infection with Mycobacterium tuberculosis (Mtb) is characterized by localized, roughly spherical lesions within which the pathogen interacts with host cells. Containment of the infection or progression of disease depends on the behavior of individual cells, which, in turn, depends on the local molecular environment and on contact with neighboring cells. Modeling can help us understand the nonlinear interactions that drive the overall dynamics in this system. Early events in infection are particularly important, as are spatial effects and inherently stochastic processes. We describe a model of early Mycobacterium infection using the CyCells simulator, which was designed to capture these effects. We relate CyCells simulations of the model to several experimental observations of individual components of the response to Mtb.

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Year:  2006        PMID: 17086496     DOI: 10.1007/s11538-006-9103-y

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  19 in total

Review 1.  Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Authors:  Vipin Narang; James Decraene; Shek-Yoon Wong; Bindu S Aiswarya; Andrew R Wasem; Shiang Rong Leong; Alexandre Gouaillard
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

2.  A spatial model of the efficiency of T cell search in the influenza-infected lung.

Authors:  Drew Levin; Stephanie Forrest; Soumya Banerjee; Candice Clay; Judy Cannon; Melanie Moses; Frederick Koster
Journal:  J Theor Biol       Date:  2016-02-23       Impact factor: 2.691

Review 3.  A multifaceted approach to modeling the immune response in tuberculosis.

Authors:  Simeone Marino; Jennifer J Linderman; Denise E Kirschner
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-31

4.  Multiscale computational modeling reveals a critical role for TNF-α receptor 1 dynamics in tuberculosis granuloma formation.

Authors:  Mohammad Fallahi-Sichani; Mohammed El-Kebir; Simeone Marino; Denise E Kirschner; Jennifer J Linderman
Journal:  J Immunol       Date:  2011-02-14       Impact factor: 5.422

5.  Higher level of replication efficiency of 2009 (H1N1) pandemic influenza virus than those of seasonal and avian strains: kinetics from epithelial cell culture and computational modeling.

Authors:  Hugh Mitchell; Drew Levin; Stephanie Forrest; Catherine A A Beauchemin; Jennifer Tipper; Jennifer Knight; Nathaniel Donart; R Colby Layton; John Pyles; Peng Gao; Kevin S Harrod; Alan S Perelson; Frederick Koster
Journal:  J Virol       Date:  2010-11-10       Impact factor: 5.103

Review 6.  Tuberculosis: global approaches to a global disease.

Authors:  Denise E Kirschner; Douglas Young; JoAnne L Flynn
Journal:  Curr Opin Biotechnol       Date:  2010-07-14       Impact factor: 9.740

7.  Agent-based modeling of host-pathogen systems: The successes and challenges.

Authors:  Amy L Bauer; Catherine A A Beauchemin; Alan S Perelson
Journal:  Inf Sci (N Y)       Date:  2009-04-29       Impact factor: 6.795

8.  Synergy between individual TNF-dependent functions determines granuloma performance for controlling Mycobacterium tuberculosis infection.

Authors:  J Christian J Ray; JoAnne L Flynn; Denise E Kirschner
Journal:  J Immunol       Date:  2009-03-15       Impact factor: 5.422

Review 9.  Review of the systems biology of the immune system using agent-based models.

Authors:  Snehal B Shinde; Manish P Kurhekar
Journal:  IET Syst Biol       Date:  2018-06       Impact factor: 1.615

10.  An agent-based model of cellular dynamics and circadian variability in human endotoxemia.

Authors:  Tung T Nguyen; Steve E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  PLoS One       Date:  2013-01-30       Impact factor: 3.240

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