Literature DB >> 20637596

Tuberculosis: global approaches to a global disease.

Denise E Kirschner1, Douglas Young, JoAnne L Flynn.   

Abstract

Mycobacterium tuberculosis is a remarkably successful human pathogen. The interaction with the human host is complex and much remains unknown. Recent advances in systems biology have allowed the integration of data from humans and animal models into computational approaches. For example, mathematical models provide a platform for in silico manipulation of host-pathogen interactions to gain insight into this infection across temporal and biologic scales. Here, we review recent studies on global approaches toward identifying comprehensive responses of both host and bacillus during infection, and the potential for incorporation of these data into many types of useful computational systems. Systems biology approaches provide a unique opportunity to study interventions that may improve therapy and vaccines against this major killer.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20637596      PMCID: PMC2943033          DOI: 10.1016/j.copbio.2010.06.002

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  70 in total

1.  A comparison of random vs. chemotaxis-driven contacts of T cells with dendritic cells during repertoire scanning.

Authors:  Thomas Riggs; Adrienne Walts; Nicolas Perry; Laura Bickle; Jennifer N Lynch; Amy Myers; Joanne Flynn; Jennifer J Linderman; Mark J Miller; Denise E Kirschner
Journal:  J Theor Biol       Date:  2007-10-18       Impact factor: 2.691

2.  Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites.

Authors:  Damien Chaussabel; Roshanak Tolouei Semnani; Mary Ann McDowell; David Sacks; Alan Sher; Thomas B Nutman
Journal:  Blood       Date:  2003-03-27       Impact factor: 22.113

3.  Identification of key processes that control tumor necrosis factor availability in a tuberculosis granuloma.

Authors:  Mohammad Fallahi-Sichani; Matthew A Schaller; Denise E Kirschner; Steven L Kunkel; Jennifer J Linderman
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

4.  Global effects of inactivation of the pyruvate kinase gene in the Mycobacterium tuberculosis complex.

Authors:  Sivagamisundaram Chavadi; Esen Wooff; Nicholas G Coldham; Manjula Sritharan; R Glyn Hewinson; Stephen V Gordon; Paul R Wheeler
Journal:  J Bacteriol       Date:  2009-10-09       Impact factor: 3.490

5.  Principal Component Analysis of Proteome Dynamics in Iron-starved Mycobacterium Tuberculosis.

Authors:  Prahlad K Rao; Qingbo Li
Journal:  J Proteomics Bioinform       Date:  2009-01-15

6.  The human immune response to Mycobacterium tuberculosis in lung and lymph node.

Authors:  Simeone Marino; Denise E Kirschner
Journal:  J Theor Biol       Date:  2004-04-21       Impact factor: 2.691

7.  A critical role for CD8 T cells in a nonhuman primate model of tuberculosis.

Authors:  Crystal Y Chen; Dan Huang; Richard C Wang; Ling Shen; Gucheng Zeng; Shuyun Yao; Yun Shen; Lisa Halliday; Jeff Fortman; Milton McAllister; Jim Estep; Robert Hunt; Daphne Vasconcelos; George Du; Steven A Porcelli; Michelle H Larsen; William R Jacobs; Barton F Haynes; Norman L Letvin; Zheng W Chen
Journal:  PLoS Pathog       Date:  2009-04-17       Impact factor: 6.823

8.  Cytological and transcript analyses reveal fat and lazy persister-like bacilli in tuberculous sputum.

Authors:  Natalie J Garton; Simon J Waddell; Anna L Sherratt; Su-Min Lee; Rebecca J Smith; Claire Senner; Jason Hinds; Kumar Rajakumar; Richard A Adegbola; Gurdyal S Besra; Philip D Butcher; Michael R Barer
Journal:  PLoS Med       Date:  2008-04-01       Impact factor: 11.069

9.  Transcriptional profiling of mycobacterial antigen-induced responses in infants vaccinated with BCG at birth.

Authors:  Helen A Fletcher; Alana Keyser; Mark Bowmaker; Peter C Sayles; Gilla Kaplan; Greg Hussey; Adrian V S Hill; Willem A Hanekom
Journal:  BMC Med Genomics       Date:  2009-02-24       Impact factor: 3.063

10.  Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets.

Authors:  Neema Jamshidi; Bernhard Ø Palsson
Journal:  BMC Syst Biol       Date:  2007-06-08
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  18 in total

1.  Systems biology approaches to understanding mycobacterial survival mechanisms.

Authors:  Helena I M Boshoff; Desmond S Lun
Journal:  Drug Discov Today Dis Mech       Date:  2010

2.  A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment.

Authors:  Denise Kirschner; Elsje Pienaar; Simeone Marino; Jennifer J Linderman
Journal:  Curr Opin Syst Biol       Date:  2017-05-22

3.  Multiscale computational modeling reveals a critical role for TNF-α receptor 1 dynamics in tuberculosis granuloma formation.

Authors:  Mohammad Fallahi-Sichani; Mohammed El-Kebir; Simeone Marino; Denise E Kirschner; Jennifer J Linderman
Journal:  J Immunol       Date:  2011-02-14       Impact factor: 5.422

Review 4.  21st century natural product research and drug development and traditional medicines.

Authors:  Linh T Ngo; Joseph I Okogun; William R Folk
Journal:  Nat Prod Rep       Date:  2013-04       Impact factor: 13.423

Review 5.  Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database.

Authors:  David Stucki; Sebastien Gagneux
Journal:  Tuberculosis (Edinb)       Date:  2012-12-21       Impact factor: 3.131

6.  Differential arabinan capping of lipoarabinomannan modulates innate immune responses and impacts T helper cell differentiation.

Authors:  Arun K Mishra; Joana E Alves; Karin Krumbach; Jerome Nigou; António G Castro; Jeroen Geurtsen; Lothar Eggeling; Margarida Saraiva; Gurdyal S Besra
Journal:  J Biol Chem       Date:  2012-11-09       Impact factor: 5.157

7.  Role of P27 -P55 operon from Mycobacterium tuberculosis in the resistance to toxic compounds.

Authors:  María V Bianco; Federico C Blanco; Belén Imperiale; Marina A Forrellad; Roxana V Rocha; Laura I Klepp; Angel A Cataldi; Nora Morcillo; Fabiana Bigi
Journal:  BMC Infect Dis       Date:  2011-07-16       Impact factor: 3.090

8.  NF-κB Signaling Dynamics Play a Key Role in Infection Control in Tuberculosis.

Authors:  Mohammad Fallahi-Sichani; Denise E Kirschner; Jennifer J Linderman
Journal:  Front Physiol       Date:  2012-06-06       Impact factor: 4.566

9.  Modeling innate immune response to early Mycobacterium infection.

Authors:  Rafael V Carvalho; Jetty Kleijn; Annemarie H Meijer; Fons J Verbeek
Journal:  Comput Math Methods Med       Date:  2012-12-09       Impact factor: 2.238

10.  Mycobacterium tuberculosis Strains Are Differentially Recognized by TLRs with an Impact on the Immune Response.

Authors:  Jenny Carmona; Andrea Cruz; Lucia Moreira-Teixeira; Carole Sousa; Jeremy Sousa; Nuno S Osorio; Ana L Saraiva; Stefan Svenson; Gunilla Kallenius; Jorge Pedrosa; Fernando Rodrigues; Antonio G Castro; Margarida Saraiva
Journal:  PLoS One       Date:  2013-06-26       Impact factor: 3.240

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