Literature DB >> 17068959

Versatile derivatives of carbohydrate-binding modules for imaging of complex carbohydrates approaching the molecular level of resolution.

Shi-You Ding1, Qi Xu, Mursheda K Ali, John O Baker, Edward A Bayer, Yoav Barak, Raphael Lamed, Junji Sugiyama, Garry Rumbles, Michael E Himmel.   

Abstract

The innate binding specificity of different carbohydrate-binding modules (CBMs) offers a versatile approach for mapping the chemistry and structure of surfaces that contain complex carbohydrates. We have employed the distinct recognition properties of a double His-tagged recombinant CBM tagged with semiconductor quantum dots for direct imaging of crystalline cellulose at the molecular level of resolution, using transmission and scanning transmission electron microscopy. In addition, three different types of CBMs from families 3, 6, and 20 that exhibit different carbohydrate specificities were each fused with either green fluorescent protein (GFP) or red fluorescent protein (RFP) and employed for double-labeling fluorescence microscopy studies of primary cell walls and various mixtures of complex carbohydrate target molecules. CBM probes can be used for characterizing both native complex carbohydrates and engineered biomaterials.

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Year:  2006        PMID: 17068959     DOI: 10.2144/000112244

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  21 in total

1.  Structure of CBM3b of the major cellulosomal scaffoldin subunit ScaA from Acetivibrio cellulolyticus.

Authors:  Oren Yaniv; Yehuda Halfon; Linda J W Shimon; Edward A Bayer; Raphael Lamed; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

2.  Imaging cell wall architecture in single Zinnia elegans tracheary elements.

Authors:  Catherine I Lacayo; Alexander J Malkin; Hoi-Ying N Holman; Liang Chen; Shi-You Ding; Mona S Hwang; Michael P Thelen
Journal:  Plant Physiol       Date:  2010-06-30       Impact factor: 8.340

3.  Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules.

Authors:  Johnnie A Walker; Taichi E Takasuka; Kai Deng; Christopher M Bianchetti; Hannah S Udell; Ben M Prom; Hyunkee Kim; Paul D Adams; Trent R Northen; Brian G Fox
Journal:  Biotechnol Biofuels       Date:  2015-12-21       Impact factor: 6.040

4.  The use of carbohydrate binding modules (CBMs) to monitor changes in fragmentation and cellulose fiber surface morphology during cellulase- and Swollenin-induced deconstruction of lignocellulosic substrates.

Authors:  Keith Gourlay; Jinguang Hu; Valdeir Arantes; Merja Penttilä; Jack N Saddler
Journal:  J Biol Chem       Date:  2014-12-19       Impact factor: 5.157

5.  Cell wall regeneration in Bangia atropurpurea (Rhodophyta) protoplasts observed using a mannan-specific carbohydrate-binding module.

Authors:  Yoshiaki Umemoto; Toshiyoshi Araki
Journal:  Mar Biotechnol (NY)       Date:  2009-05-23       Impact factor: 3.619

6.  Two structurally discrete GH7-cellobiohydrolases compete for the same cellulosic substrate fiber.

Authors:  Fernando Segato; André R L Damasio; Thiago Augusto Gonçalves; Mario T Murakami; Fabio M Squina; Mariadelourdestm Polizeli; Andrew J Mort; Rolf A Prade
Journal:  Biotechnol Biofuels       Date:  2012-04-11       Impact factor: 6.040

7.  Enhanced cellulose degradation using cellulase-nanosphere complexes.

Authors:  Craig Blanchette; Catherine I Lacayo; Nicholas O Fischer; Mona Hwang; Michael P Thelen
Journal:  PLoS One       Date:  2012-08-01       Impact factor: 3.240

8.  Cellobiohydrolase hydrolyzes crystalline cellulose on hydrophobic faces.

Authors:  Yu-San Liu; John O Baker; Yining Zeng; Michael E Himmel; Thomas Haas; Shi-You Ding
Journal:  J Biol Chem       Date:  2011-01-31       Impact factor: 5.157

9.  Tracking dynamics of plant biomass composting by changes in substrate structure, microbial community, and enzyme activity.

Authors:  Hui Wei; Melvin P Tucker; John O Baker; Michelle Harris; Yonghua Luo; Qi Xu; Michael E Himmel; Shi-You Ding
Journal:  Biotechnol Biofuels       Date:  2012-04-10       Impact factor: 6.040

10.  Synthetic xylan-binding modules for mapping of pulp fibres and wood sections.

Authors:  Lada Filonova; Lavinia Cicortas Gunnarsson; Geoffrey Daniel; Mats Ohlin
Journal:  BMC Plant Biol       Date:  2007-10-12       Impact factor: 4.215

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