Literature DB >> 25527502

The use of carbohydrate binding modules (CBMs) to monitor changes in fragmentation and cellulose fiber surface morphology during cellulase- and Swollenin-induced deconstruction of lignocellulosic substrates.

Keith Gourlay1, Jinguang Hu1, Valdeir Arantes1, Merja Penttilä2, Jack N Saddler3.   

Abstract

Although the actions of many of the hydrolytic enzymes involved in cellulose hydrolysis are relatively well understood, the contributions that amorphogenesis-inducing proteins might contribute to cellulose deconstruction are still relatively undefined. Earlier work has shown that disruptive proteins, such as the non-hydrolytic non-oxidative protein Swollenin, can open up and disaggregate the less-ordered regions of lignocellulosic substrates. Within the cellulosic fraction, relatively disordered, amorphous regions known as dislocations are known to occur along the length of the fibers. It was postulated that Swollenin might act synergistically with hydrolytic enzymes to initiate biomass deconstruction within these dislocation regions. Carbohydrate binding modules (CBMs) that preferentially bind to cellulosic substructures were fluorescently labeled. They were imaged, using confocal microscopy, to assess the distribution of crystalline and amorphous cellulose at the fiber surface, as well as to track changes in surface morphology over the course of enzymatic hydrolysis and fiber fragmentation. Swollenin was shown to promote targeted disruption of the cellulosic structure at fiber dislocations.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Amorphogenesis; Carbohydrate Binding Modules (CBMs); Cellulase; Cellulose; Cellulose Binding Modules; Confocal Microscopy; Enzyme; Fiber Dislocations; Fragmentation; Fungi; Microbiology; Swollenin

Mesh:

Substances:

Year:  2014        PMID: 25527502      PMCID: PMC4317003          DOI: 10.1074/jbc.M114.627604

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  37 in total

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Authors:  I Lee; B R Evans; J Woodward
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2.  A ninhydrin-based assay to quantitate the total protein content of tissue samples.

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Journal:  Anal Biochem       Date:  2001-05-01       Impact factor: 3.365

3.  Carbohydrate-binding modules recognize fine substructures of cellulose.

Authors:  Bradley W McLean; Alisdair B Boraston; Darren Brouwer; Nooshafarin Sanaie; Colin A Fyfe; R Antony J Warren; Douglas G Kilburn; Charles A Haynes
Journal:  J Biol Chem       Date:  2002-08-20       Impact factor: 5.157

4.  Fibre size does not appear to influence the ease of enzymatic hydrolysis of organosolv-pretreated softwoods.

Authors:  Luis F Del Rio; Richard P Chandra; Jack N Saddler
Journal:  Bioresour Technol       Date:  2011-12-23       Impact factor: 9.642

5.  Analysis of the surfaces of wood tissues and pulp fibers using carbohydrate-binding modules specific for crystalline cellulose and mannan.

Authors:  Lada Filonova; Asa M Kallas; Lionel Greffe; Gunnar Johansson; Tuula T Teeri; Geoffrey Daniel
Journal:  Biomacromolecules       Date:  2007-01       Impact factor: 6.988

6.  Homologous expression and characterization of Cel61A (EG IV) of Trichoderma reesei.

Authors:  J Karlsson; M Saloheimo; M Siika-Aho; M Tenkanen; M Penttilä; F Tjerneld
Journal:  Eur J Biochem       Date:  2001-12

7.  Fragmentation of cellulose by the major Thermomonospora fusca cellulases, Trichoderma reesei CBHI, and their mixtures.

Authors:  L P Walker; D B Wilson; D C Irvin; C McQuire; M Price
Journal:  Biotechnol Bioeng       Date:  1992-11       Impact factor: 4.530

8.  Swollenin aids in the amorphogenesis step during the enzymatic hydrolysis of pretreated biomass.

Authors:  Keith Gourlay; Jinguang Hu; Valdeir Arantes; Martina Andberg; Markku Saloheimo; Merja Penttilä; Jack Saddler
Journal:  Bioresour Technol       Date:  2013-05-23       Impact factor: 9.642

9.  Use of substructure-specific carbohydrate binding modules to track changes in cellulose accessibility and surface morphology during the amorphogenesis step of enzymatic hydrolysis.

Authors:  Keith Gourlay; Valdeir Arantes; Jack N Saddler
Journal:  Biotechnol Biofuels       Date:  2012-07-24       Impact factor: 6.040

10.  Yield-determining factors in high-solids enzymatic hydrolysis of lignocellulose.

Authors:  Jan B Kristensen; Claus Felby; Henning Jørgensen
Journal:  Biotechnol Biofuels       Date:  2009-06-08       Impact factor: 6.040

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Journal:  Plant Physiol       Date:  2018-02-27       Impact factor: 8.340

3.  The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images.

Authors:  Budi J Hidayat; Carmen Weisskopf; Claus Felby; Katja S Johansen; Lisbeth G Thygesen
Journal:  AMB Express       Date:  2015-12-01       Impact factor: 3.298

4.  Predicting the most appropriate wood biomass for selected industrial applications: comparison of wood, pulping, and enzymatic treatments using fluorescent-tagged carbohydrate-binding modules.

Authors:  Vinay Khatri; Fatma Meddeb-Mouelhi; Pierre-Louis Bombeck; Daniel Montplaisir; Aurore Richel; Marc Beauregard
Journal:  Biotechnol Biofuels       Date:  2017-12-06       Impact factor: 6.040

5.  Hydrolytic potential of five fungal supernatants to enhance a commercial enzyme cocktail.

Authors:  Ausra Peciulyte; Maria Pisano; Ronald P de Vries; Lisbeth Olsson
Journal:  Biotechnol Lett       Date:  2017-06-01       Impact factor: 2.461

6.  Pichia pastoris is a Suitable Host for the Heterologous Expression of Predicted Class I and Class II Hydrophobins for Discovery, Study, and Application in Biotechnology.

Authors:  Julie-Anne Gandier; Emma R Master
Journal:  Microorganisms       Date:  2018-01-05

7.  Determination of optimal biomass pretreatment strategies for biofuel production: investigation of relationships between surface-exposed polysaccharides and their enzymatic conversion using carbohydrate-binding modules.

Authors:  Vinay Khatri; Fatma Meddeb-Mouelhi; Kokou Adjallé; Simon Barnabé; Marc Beauregard
Journal:  Biotechnol Biofuels       Date:  2018-05-18       Impact factor: 6.040

8.  Quantifying cellulose accessibility during enzyme-mediated deconstruction using 2 fluorescence-tagged carbohydrate-binding modules.

Authors:  Vera Novy; Kevin Aïssa; Fredrik Nielsen; Suzana K Straus; Peter Ciesielski; Christopher G Hunt; Jack Saddler
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

9.  Functional characterization of the native swollenin from Trichoderma reesei: study of its possible role as C1 factor of enzymatic lignocellulose conversion.

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Journal:  Biotechnol Biofuels       Date:  2016-08-26       Impact factor: 6.040

Review 10.  Understanding the structure and function of bacterial expansins: a prerequisite towards practical applications for the bioenergy and agricultural industries.

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Journal:  Microb Biotechnol       Date:  2016-07-01       Impact factor: 5.813

  10 in total

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