Literature DB >> 17066299

Structural divergence between the human and chimpanzee genomes.

Hildegard Kehrer-Sawatzki1, David N Cooper.   

Abstract

The structural microheterogeneity evident between the human and chimpanzee genomes is quite considerable and includes inversions and duplications as well as deletions, ranging in size from a few base-pairs up to several megabases (Mb). Insertions and deletions have together given rise to at least 150 Mb of genomic DNA sequence that is either present or absent in humans as compared to chimpanzees. Such regions often contain paralogous sequences and members of multigene families thereby ensuring that the human and chimpanzee genomes differ by a significant fraction of their gene content. There is as yet no evidence to suggest that the large chromosomal rearrangements which serve to distinguish the human and chimpanzee karyotypes have influenced either speciation or the evolution of lineage-specific traits. However, the myriad submicroscopic rearrangements in both genomes, particularly those involving copy number variation, are unlikely to represent exclusively neutral changes and hence promise to facilitate the identification of genes that have been important for human-specific evolution.

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Year:  2006        PMID: 17066299     DOI: 10.1007/s00439-006-0270-6

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  134 in total

1.  Testing the chromosomal speciation hypothesis for humans and chimpanzees.

Authors:  Jianzhi Zhang; Xiaoxia Wang; Ondrej Podlaha
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

Review 2.  Evolutionary biology: how did the human species form?

Authors:  N H Barton
Journal:  Curr Biol       Date:  2006-08-22       Impact factor: 10.834

3.  Characterization of the human lineage-specific pericentric inversion that distinguishes human chromosome 1 from the homologous chromosomes of the great apes.

Authors:  Justyna M Szamalek; Violaine Goidts; David N Cooper; Horst Hameister; Hildegard Kehrer-Sawatzki
Journal:  Hum Genet       Date:  2006-06-15       Impact factor: 4.132

4.  Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

Authors:  James Taylor; Svitlana Tyekucheva; Michael Zody; Francesca Chiaromonte; Kateryna D Makova
Journal:  Mol Biol Evol       Date:  2005-11-09       Impact factor: 16.240

5.  Alu-mediated inactivation of the human CMP- N-acetylneuraminic acid hydroxylase gene.

Authors:  T Hayakawa; Y Satta; P Gagneux; A Varki; N Takahata
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-18       Impact factor: 11.205

6.  Genomic DNA insertions and deletions occur frequently between humans and nonhuman primates.

Authors:  Kelly A Frazer; Xiyin Chen; David A Hinds; P V Krishna Pant; Nila Patil; David R Cox
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

7.  Chromosomal speciation and molecular divergence--accelerated evolution in rearranged chromosomes.

Authors:  Arcadi Navarro; Nick H Barton
Journal:  Science       Date:  2003-04-11       Impact factor: 47.728

8.  Molecular definition of pericentric inversion breakpoints occurring during the evolution of humans and chimpanzees.

Authors:  E Nickerson; D L Nelson
Journal:  Genomics       Date:  1998-06-15       Impact factor: 5.736

Review 9.  Fluorescence in situ hybridization to chromosomes as a tool to understand human and primate genome evolution.

Authors:  J Wienberg
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

10.  Discovery of human inversion polymorphisms by comparative analysis of human and chimpanzee DNA sequence assemblies.

Authors:  Lars Feuk; Jeffrey R MacDonald; Terence Tang; Andrew R Carson; Martin Li; Girish Rao; Razi Khaja; Stephen W Scherer
Journal:  PLoS Genet       Date:  2005-10-28       Impact factor: 5.917

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  21 in total

1.  Large tandem, higher order repeats and regularly dispersed repeat units contribute substantially to divergence between human and chimpanzee Y chromosomes.

Authors:  Vladimir Paar; Matko Glunčić; Ivan Basar; Marija Rosandić; Petar Paar; Mislav Cvitković
Journal:  J Mol Evol       Date:  2010-11-20       Impact factor: 2.395

Review 2.  Transposable elements as drivers of genomic and biological diversity in vertebrates.

Authors:  Astrid Böhne; Frédéric Brunet; Delphine Galiana-Arnoux; Christina Schultheis; Jean-Nicolas Volff
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

3.  Lineage-specific expansions of TET/JBP genes and a new class of DNA transposons shape fungal genomic and epigenetic landscapes.

Authors:  Lakshminarayan M Iyer; Dapeng Zhang; Robson F de Souza; Patricia J Pukkila; Anjana Rao; L Aravind
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-07       Impact factor: 11.205

Review 4.  Explaining human uniqueness: genome interactions with environment, behaviour and culture.

Authors:  Ajit Varki; Daniel H Geschwind; Evan E Eichler
Journal:  Nat Rev Genet       Date:  2008-10       Impact factor: 53.242

5.  CpG dinucleotides and the mutation rate of non-CpG DNA.

Authors:  Jean-Claude Walser; Loïc Ponger; Anthony V Furano
Journal:  Genome Res       Date:  2008-06-11       Impact factor: 9.043

6.  A gene-based genetic linkage map of the collared flycatcher (Ficedula albicollis) reveals extensive synteny and gene-order conservation during 100 million years of avian evolution.

Authors:  Niclas Backström; Nikoletta Karaiskou; Erica H Leder; Lars Gustafsson; Craig R Primmer; Anna Qvarnström; Hans Ellegren
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

7.  Selection upon genome architecture: conservation of functional neighborhoods with changing genes.

Authors:  Fátima Al-Shahrour; Pablo Minguez; Tomás Marqués-Bonet; Elodie Gazave; Arcadi Navarro; Joaquín Dopazo
Journal:  PLoS Comput Biol       Date:  2010-10-07       Impact factor: 4.475

8.  Copy number variation in the bovine genome.

Authors:  João Fadista; Bo Thomsen; Lars-Erik Holm; Christian Bendixen
Journal:  BMC Genomics       Date:  2010-05-06       Impact factor: 3.969

Review 9.  The evolutionary significance of copy number variation in the human genome.

Authors:  G H Perry
Journal:  Cytogenet Genome Res       Date:  2009-03-11       Impact factor: 1.636

10.  Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae.

Authors:  Dina A Faddah; Eric W Ganko; Caroline McCoach; Joseph K Pickrell; Sean E Hanlon; Frederick G Mann; Joanna O Mieczkowska; Corbin D Jones; Jason D Lieb; Todd J Vision
Journal:  PLoS Genet       Date:  2009-06-05       Impact factor: 5.917

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