Literature DB >> 17064801

Precision mapping of the metabolome.

Rainer Breitling1, Andrew R Pitt, Michael P Barrett.   

Abstract

The global study of the structure and dynamics of metabolic networks has been hindered by a lack of techniques that identify metabolites and their biochemical relationship in complex mixtures. The recent application of Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) to metabolomic analysis suggests a way to tackle the problem. A lower-cost alternative to high-field FTICR-MS, the Orbitrap mass analyzer, promises accelerated activity in this area. Here, we show how the ultra-high mass accuracy and resolution provided by this new generation of mass spectrometers can help to identify metabolites and connect them into metabolic networks. Data from perturbation studies and isotope-tracking experiments can complement this information to create metabolic maps de novo and chart unexplored areas of metabolism.

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Year:  2006        PMID: 17064801     DOI: 10.1016/j.tibtech.2006.10.006

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  26 in total

1.  Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer.

Authors:  Wenyun Lu; Michelle F Clasquin; Eugene Melamud; Daniel Amador-Noguez; Amy A Caudy; Joshua D Rabinowitz
Journal:  Anal Chem       Date:  2010-04-15       Impact factor: 6.986

2.  Parts-per-billion mass measurement accuracy achieved through the combination of multiple linear regression and automatic gain control in a Fourier transform ion cyclotron resonance mass spectrometer.

Authors:  D Keith Williams; David C Muddiman
Journal:  Anal Chem       Date:  2007-06-01       Impact factor: 6.986

3.  Biosynthetic origin of natural products isolated from marine microorganism-invertebrate assemblages.

Authors:  T Luke Simmons; R Cameron Coates; Benjamin R Clark; Niclas Engene; David Gonzalez; Eduardo Esquenazi; Pieter C Dorrestein; William H Gerwick
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

Review 4.  Database resources in metabolomics: an overview.

Authors:  Eden P Go
Journal:  J Neuroimmune Pharmacol       Date:  2009-05-07       Impact factor: 4.147

5.  Exploring metallodrug-protein interactions by mass spectrometry: comparisons between platinum coordination complexes and an organometallic ruthenium compound.

Authors:  Angela Casini; Chiara Gabbiani; Elena Michelucci; Giuseppe Pieraccini; Gloriano Moneti; Paul J Dyson; Luigi Messori
Journal:  J Biol Inorg Chem       Date:  2009-03-14       Impact factor: 3.358

6.  A signal filtering method for improved quantification and noise discrimination in fourier transform ion cyclotron resonance mass spectrometry-based metabolomics data.

Authors:  Tristan G Payne; Andrew D Southam; Theodoros N Arvanitis; Mark R Viant
Journal:  J Am Soc Mass Spectrom       Date:  2009-02-07       Impact factor: 3.109

7.  Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds.

Authors:  Fangping Mu; Clifford J Unkefer; Pat J Unkefer; William S Hlavacek
Journal:  Bioinformatics       Date:  2011-04-08       Impact factor: 6.937

8.  Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining.

Authors:  Fabien Jourdan; Ludovic Cottret; Laurence Huc; David Wildridge; Richard Scheltema; Anne Hillenweck; Michael P Barrett; Daniel Zalko; David G Watson; Laurent Debrauwer
Journal:  Metabolomics       Date:  2010-01-06       Impact factor: 4.290

9.  Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'.

Authors:  John Draper; David P Enot; David Parker; Manfred Beckmann; Stuart Snowdon; Wanchang Lin; Hassan Zubair
Journal:  BMC Bioinformatics       Date:  2009-07-21       Impact factor: 3.169

10.  High-resolution extracted ion chromatography, a new tool for metabolomics and lipidomics using a second-generation orbitrap mass spectrometer.

Authors:  Albert Koulman; Gary Woffendin; Vinod K Narayana; Helen Welchman; Catharina Crone; Dietrich A Volmer
Journal:  Rapid Commun Mass Spectrom       Date:  2009-05       Impact factor: 2.419

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