Literature DB >> 17057337

Integrated software for macromolecular crystallography synchrotron beamlines II: revision, robots and a database.

John M Skinner1, Matt Cowan, Rick Buono, William Nolan, Heinz Bosshard, Howard H Robinson, Annie Héroux, Alexei S Soares, Dieter K Schneider, Robert M Sweet.   

Abstract

This manuscript chronicles the evolution of software used originally to control a diffractometer at a macromolecular crystallography beamline. The system has been augmented and rewritten. A modular and carefully organized suite of programs now handles the whole experimental environment from a single vantage point. It provides automatic logging of the experiment and communication with the user, all the way from an initial proposal to perform the work to the end of data collection. This has included construction of a relational database to organize all details of the experiment and incorporation of a robotic specimen changer to provide automation for high-throughput applications.

Mesh：

Year:  2006        PMID： 17057337     DOI： 10.1107/S0907444906030162

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN： 0907-4449


  11 in total

1.  Acoustic methods for high-throughput protein crystal mounting at next-generation macromolecular crystallographic beamlines.

Authors:  Christian G Roessler; Anthony Kuczewski; Richard Stearns; Richard Ellson; Joseph Olechno; Allen M Orville; Marc Allaire; Alexei S Soares; Annie Héroux
Journal:  J Synchrotron Radiat       Date:  2013-08-08       Impact factor: 2.616

2.  JBluIce-EPICS control system for macromolecular crystallography.

Authors:  Sergey Stepanov; Oleg Makarov; Mark Hilgart; Sudhir Babu Pothineni; Alex Urakhchin; Satish Devarapalli; Derek Yoder; Michael Becker; Craig Ogata; Ruslan Sanishvili; Nagarajan Venugopalan; Janet L Smith; Robert F Fischetti
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-02-15

3.  Acoustically mounted microcrystals yield high-resolution X-ray structures.

Authors:  Alexei S Soares; Matthew A Engel; Richard Stearns; Sammy Datwani; Joe Olechno; Richard Ellson; John M Skinner; Marc Allaire; Allen M Orville
Journal:  Biochemistry       Date:  2011-05-09       Impact factor: 3.162

Review 4.  Correlated single-crystal electronic absorption spectroscopy and X-ray crystallography at NSLS beamline X26-C.

Authors:  Allen M Orville; Richard Buono; Matt Cowan; Annie Héroux; Grace Shea-McCarthy; Dieter K Schneider; John M Skinner; Michael J Skinner; Deborah Stoner-Ma; Robert M Sweet
Journal:  J Synchrotron Radiat       Date:  2011-03-19       Impact factor: 2.616

5.  MxCuBE: a synchrotron beamline control environment customized for macromolecular crystallography experiments.

Authors:  José Gabadinho; Antonia Beteva; Matias Guijarro; Vicente Rey-Bakaikoa; Darren Spruce; Matthew W Bowler; Sandor Brockhauser; David Flot; Elspeth J Gordon; David R Hall; Bernard Lavault; Andrew A McCarthy; Joanne McCarthy; Edward Mitchell; Stéphanie Monaco; Christoph Mueller-Dieckmann; Didier Nurizzo; Raimond B G Ravelli; Xavier Thibault; Martin A Walsh; Gordon A Leonard; Sean M McSweeney
Journal:  J Synchrotron Radiat       Date:  2010-07-13       Impact factor: 2.616

6.  RapiData: a practical course in macromolecular X-ray diffraction data measurement and structure solving at the NSLS.

Authors:  R M Sweet; A Soares
Journal:  J Appl Crystallogr       Date:  2010-09-11       Impact factor: 3.304

7.  Implementation of remote monitoring and diffraction evaluation systems at the Photon Factory macromolecular crystallography beamlines.

Authors:  Yusuke Yamada; Nobuo Phonda; Naohiro Matsugaki; Noriyuki Igarashi; Masahiko Hiraki; Soichi Wakatsuki
Journal:  J Synchrotron Radiat       Date:  2008-04-18       Impact factor: 2.616

8.  Unraveling Cholesterol Catabolism in Mycobacterium tuberculosis: ChsE4-ChsE5 α2β2 Acyl-CoA Dehydrogenase Initiates β-Oxidation of 3-Oxo-cholest-4-en-26-oyl CoA.

Authors:  Meng Yang; Rui Lu; Kip E Guja; Matthew F Wipperman; Johnna R St Clair; Amber C Bonds; Miguel Garcia-Diaz; Nicole S Sampson
Journal:  ACS Infect Dis       Date:  2015-01-08       Impact factor: 5.084

9.  Macromolecular crystallography beamline X25 at the NSLS.

Authors:  Annie Héroux; Marc Allaire; Richard Buono; Matthew L Cowan; Joseph Dvorak; Leon Flaks; Steven Lamarra; Stuart F Myers; Allen M Orville; Howard H Robinson; Christian G Roessler; Dieter K Schneider; Grace Shea-McCarthy; John M Skinner; Michael Skinner; Alexei S Soares; Robert M Sweet; Lonny E Berman
Journal:  J Synchrotron Radiat       Date:  2014-04-08       Impact factor: 2.616

10.  Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt.

Authors:  Alexei S Soares; Jeffrey D Mullen; Ruchi M Parekh; Grace S McCarthy; Christian G Roessler; Rick Jackimowicz; John M Skinner; Allen M Orville; Marc Allaire; Robert M Sweet
Journal:  J Synchrotron Radiat       Date:  2014-10-09       Impact factor: 2.616
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