Literature DB >> 17044708

Tautomerism in the guanyl radical.

Chryssostomos Chatgilialoglu1, Clara Caminal, Alessio Altieri, Georgios C Vougioukalakis, Quinto G Mulazzani, Thanasis Gimisis, Maurizio Guerra.   

Abstract

Despite a few decades of intense study, a full description of tautomers of one-electron-oxidized guanine remains to be achieved. Here we show that two of these tautomers are produced by the protonation of an 8-haloguanine electron adduct. The rate constants for the reactions of hydrated electrons (e(aq)(-)) with a variety of 8-substituted guanine derivatives have been measured by a pulse radiolysis technique and correlated with both inductive and resonance components of the substituents. The fate of electron adducts was investigated by radiolytic methods coupled with product studies and addressed computationally by means of time-dependent DFT (TD-B3LYP/6-311G**//B1B95/6-31+G**) calculations. The reaction of e(aq)(-) with 8-haloguanosine or 8-halo-2'-deoxyguanosine produces the first observable transient species that decay unimolecularly (k = 1 x 10(5) s(-)(1) at 22 degrees C) to give the one-electron oxidized guanosine or 2'-deoxyguanosine. Theory suggests that the electron adducts of 8-bromoguanine derivatives protonated at C8 form a pi-complex, with the Br atom situated above the molecular plane, that is prompt to eject Br(-). The two short-lived intermediates, which show a substantial difference in their absorption spectra, are recognized to be the two purine tautomers (i.e., iminic 7 and aminic 3 forms). The spin density distributions of the two tautomers are quite different at the O6 and N10 positions, whereas they are very similar at the N3, C5, and C8 positions. The resonance structures of the two tautomers are discussed in some detail. B1B95/6-31+G calculations show also that the tautomerization from the iminic (7) to the aminic (3) arrangement is a water-assisted process.

Entities:  

Year:  2006        PMID: 17044708     DOI: 10.1021/ja062636h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Prototropic equilibria in DNA containing one-electron oxidized GC: intra-duplex vs. duplex to solvent deprotonation.

Authors:  Amitava Adhikary; Anil Kumar; Shawn A Munafo; Deepti Khanduri; Michael D Sevilla
Journal:  Phys Chem Chem Phys       Date:  2010       Impact factor: 3.676

2.  Highly oxidizing excited states of one-electron-oxidized guanine in DNA: wavelength and pH dependence.

Authors:  Deepti Khanduri; Amitava Adhikary; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2011-03-07       Impact factor: 15.419

3.  Independent Generation and Time-Resolved Detection of 2'-Deoxyguanosin-N2-yl Radicals.

Authors:  Liwei Zheng; Xiaojuan Dai; Hongmei Su; Marc M Greenberg
Journal:  Angew Chem Int Ed Engl       Date:  2020-06-02       Impact factor: 15.336

4.  Electron stimulated desorption of anions from native and brominated single stranded oligonucleotide trimers.

Authors:  Katarzyna Polska; Janusz Rak; Andrew D Bass; Pierre Cloutier; Léon Sanche
Journal:  J Chem Phys       Date:  2012-02-21       Impact factor: 3.488

5.  Proton-Transfer Reactions in One-Electron-Oxidized G-Quadruplexes: A Density Functional Theory Study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2022-02-13       Impact factor: 2.991

Review 6.  The 8,5'-cyclopurine-2'-deoxynucleosides: candidate neurodegenerative DNA lesions in xeroderma pigmentosum, and unique probes of transcription and nucleotide excision repair.

Authors:  P J Brooks
Journal:  DNA Repair (Amst)       Date:  2008-05-20

7.  One-electron reduction potential of the neutral guanyl radical in the GC base pair of duplex DNA.

Authors:  Sujata S Shinde; Andrej Maroz; Michael P Hay; Robert F Anderson
Journal:  J Am Chem Soc       Date:  2009-04-15       Impact factor: 15.419

8.  Oxidation of guanine by carbonate radicals derived from photolysis of carbonatotetramminecobalt(III) complexes and the pH dependence of intrastrand DNA cross-links mediated by guanine radical reactions.

Authors:  Conor Crean; Young Ae Lee; Byeong Hwa Yun; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Chembiochem       Date:  2008-08-11       Impact factor: 3.164

9.  Variations of the tautomeric preferences and π-electron delocalization for the neutral and redox forms of purine when proceeding from the gas phase (DFT) to water (PCM).

Authors:  Ewa D Raczyńska; Beata Kamińska
Journal:  J Mol Model       Date:  2013-07-07       Impact factor: 1.810

10.  Mechanistic aspects of hydration of guanine radical cations in DNA.

Authors:  Yekaterina Rokhlenko; Jean Cadet; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  J Am Chem Soc       Date:  2014-04-15       Impact factor: 15.419

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