Literature DB >> 17035074

Unnatural base pair systems for DNA/RNA-based biotechnology.

Ichiro Hirao1.   

Abstract

The development of unnatural, extra base pairs could expand genetic information, by enabling the site-specific incorporation of functional components into nucleic acids and proteins. Researchers have been trying to create unnatural base pairs by drawing upon non-standard hydrogen-bonding topologies, shape complementarity, and/or hydrophobic interfaces, to confer sufficient selectivity and efficiency to work with the natural A-T(U) and G-C base pairs in replication, transcription and translation. The development of artificial genetic systems has been broadly advanced by combining the extra base pairs with modified natural components, including the base pairs, substrates and polymerase enzymes.

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Year:  2006        PMID: 17035074     DOI: 10.1016/j.cbpa.2006.09.021

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  43 in total

1.  Reversible bond formation enables the replication and amplification of a crosslinking salen complex as an orthogonal base pair.

Authors:  Corinna Kaul; Markus Müller; Mirko Wagner; Sabine Schneider; Thomas Carell
Journal:  Nat Chem       Date:  2011-08-28       Impact factor: 24.427

Review 2.  Setting the stage: the history, chemistry, and geobiology behind RNA.

Authors:  Steven A Benner; Hyo-Joong Kim; Zunyi Yang
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

3.  Measurement and theory of hydrogen bonding contribution to isosteric DNA base pairs.

Authors:  Omid Khakshoor; Steven E Wheeler; K N Houk; Eric T Kool
Journal:  J Am Chem Soc       Date:  2012-02-02       Impact factor: 15.419

Review 4.  Model systems for understanding DNA base pairing.

Authors:  Andrew T Krueger; Eric T Kool
Journal:  Curr Opin Chem Biol       Date:  2007-11-09       Impact factor: 8.822

5.  Minor groove hydrogen bonds and the replication of unnatural base pairs.

Authors:  Shigeo Matsuda; Aaron M Leconte; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

6.  Polymerase amplification, cloning, and gene expression of benzo-homologous "yDNA" base pairs.

Authors:  Jijumon Chelliserrykattil; Haige Lu; Alex H F Lee; Eric T Kool
Journal:  Chembiochem       Date:  2008-12-15       Impact factor: 3.164

7.  Enzymatic incorporation of emissive pyrimidine ribonucleotides.

Authors:  Seergazhi G Srivatsan; Yitzhak Tor
Journal:  Chem Asian J       Date:  2009-03-02

Review 8.  Nucleoside, nucleotide and oligonucleotide based amphiphiles: a successful marriage of nucleic acids with lipids.

Authors:  Arnaud Gissot; Michel Camplo; Mark W Grinstaff; Philippe Barthélémy
Journal:  Org Biomol Chem       Date:  2008-03-05       Impact factor: 3.876

9.  Efficient replication bypass of size-expanded DNA base pairs in bacterial cells.

Authors:  James C Delaney; Jianmin Gao; Haibo Liu; Nidhi Shrivastav; John M Essigmann; Eric T Kool
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

10.  Unnatural imidazopyridopyrimidine:naphthyridine base pairs: selective incorporation and extension reaction by Deep Vent (exo- ) DNA polymerase.

Authors:  Shintaro Ogata; Mayumi Takahashi; Noriaki Minakawa; Akira Matsuda
Journal:  Nucleic Acids Res       Date:  2009-07-23       Impact factor: 16.971

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