Literature DB >> 17028139

Dynamics of the nucleotide pocket of myosin measured by spin-labeled nucleotides.

Nariman Naber1, Thomas J Purcell, Edward Pate, Roger Cooke.   

Abstract

We have used electron paramagnetic probes attached to the ribose of ATP (SL-ATP) to monitor conformational changes in the nucleotide pocket of myosin. Spectra for analogs bound to myosin in the absence of actin showed a high degree of immobilization, indicating a closed nucleotide pocket. In the Actin.Myosin.SL-AMPPNP, Actin.Myosin.SL-ADP.BeF(3), and Actin.Myosin.SL-ADP.AlF(4) complexes, which mimic weakly binding states near the beginning of the power stroke, the nucleotide pocket remained closed. The spectra of the strongly bound Actin.Myosin.SL-ADP complex consisted of two components, one similar to the closed pocket and one with increased probe mobility, indicating a more open pocket, The temperature dependence of the spectra showed that the two conformations of the nucleotide pocket were in equilibrium, with the open conformation more favorable at higher temperatures. These results, which show that opening of the pocket occurs only in the strongly bound states, appear reasonable, as this would tend to keep ADP bound until the end of the power stroke. This conclusion also suggests that force is initially generated by a myosin with a closed nucleotide pocket.

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Year:  2006        PMID: 17028139      PMCID: PMC1697850          DOI: 10.1529/biophysj.106.090035

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  51 in total

1.  Molecular dynamics study of the energetic, mechanistic, and structural implications of a closed phosphate tube in ncd.

Authors:  T J Minehardt; R Cooke; E Pate; P A Kollman
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

2.  EPR spectroscopy shows a microtubule-dependent conformational change in the kinesin switch 1 domain.

Authors:  Nariman Naber; Sarah Rice; Marija Matuska; Ronald D Vale; Roger Cooke; Edward Pate
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

3.  Thermodynamic properties of the kinesin neck-region docking to the catalytic core.

Authors:  S Rice; Y Cui; C Sindelar; N Naber; M Matuska; R Vale; R Cooke
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

4.  Kinetic and spectroscopic evidence for three actomyosin:ADP states in smooth muscle.

Authors:  S S Rosenfeld; J Xing; M Whitaker; H C Cheung; F Brown; A Wells; R A Milligan; H L Sweeney
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

5.  Evidence for cleft closure in actomyosin upon ADP release.

Authors:  N Volkmann; D Hanein; G Ouyang; K M Trybus; D J DeRosier; S Lowey
Journal:  Nat Struct Biol       Date:  2000-12

6.  Contractile properties of rabbit psoas muscle fibres inhibited by beryllium fluoride.

Authors:  M Regnier; P B Chase; D A Martyn
Journal:  J Muscle Res Cell Motil       Date:  1999-05       Impact factor: 2.698

7.  Actin-induced closure of the actin-binding cleft of smooth muscle myosin.

Authors:  Christopher M Yengo; Enrique M De La Cruz; Lynn R Chrin; Donald P Gaffney; Christopher L Berger
Journal:  J Biol Chem       Date:  2002-04-16       Impact factor: 5.157

8.  Myosin isoforms show unique conformations in the actin-bound state.

Authors:  Niels Volkmann; Greta Ouyang; Kathleen M Trybus; David J DeRosier; Susan Lowey; Dorit Hanein
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-28       Impact factor: 11.205

Review 9.  Kinesin: switch I & II and the motor mechanism.

Authors:  F Jon Kull; Sharyn A Endow
Journal:  J Cell Sci       Date:  2002-01-01       Impact factor: 5.285

10.  Crystal structure of the kinesin motor domain reveals a structural similarity to myosin.

Authors:  F J Kull; E P Sablin; R Lau; R J Fletterick; R D Vale
Journal:  Nature       Date:  1996-04-11       Impact factor: 49.962

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  17 in total

1.  Multiple conformations of the nucleotide site of Kinesin family motors in the triphosphate state.

Authors:  Nariman Naber; Adam Larson; Sarah Rice; Roger Cooke; Edward Pate
Journal:  J Mol Biol       Date:  2011-01-26       Impact factor: 5.469

2.  Nucleotide pocket thermodynamics measured by EPR reveal how energy partitioning relates myosin speed to efficiency.

Authors:  Thomas J Purcell; Nariman Naber; Kathy Franks-Skiba; Alexander R Dunn; Catherine C Eldred; Christopher L Berger; András Málnási-Csizmadia; James A Spudich; Douglas M Swank; Edward Pate; Roger Cooke
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

3.  Effects of ATP and actin-filament binding on the dynamics of the myosin II S1 domain.

Authors:  Joseph L Baker; Gregory A Voth
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

4.  Switch I closure simultaneously promotes strong binding to actin and ADP in smooth muscle myosin.

Authors:  Justin A Decarreau; Nicholas G James; Lynn R Chrin; Christopher L Berger
Journal:  J Biol Chem       Date:  2011-05-02       Impact factor: 5.157

5.  Structural kinetics of myosin by transient time-resolved FRET.

Authors:  Yuri E Nesmelov; Roman V Agafonov; Igor V Negrashov; Sarah E Blakely; Margaret A Titus; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-18       Impact factor: 11.205

6.  Early stages of the recovery stroke in myosin II studied by molecular dynamics simulations.

Authors:  Andrij Baumketner; Yuri Nesmelov
Journal:  Protein Sci       Date:  2011-10-19       Impact factor: 6.725

7.  The myosin inhibitor blebbistatin stabilizes the super-relaxed state in skeletal muscle.

Authors:  Clyde Wilson; Nariman Naber; Edward Pate; Roger Cooke
Journal:  Biophys J       Date:  2014-10-07       Impact factor: 4.033

8.  Molecular mechanisms underlying deoxy-ADP.Pi activation of pre-powerstroke myosin.

Authors:  Sarah G Nowakowski; Michael Regnier; Valerie Daggett
Journal:  Protein Sci       Date:  2017-03-21       Impact factor: 6.725

9.  The histone H4 tail regulates the conformation of the ATP-binding pocket in the SNF2h chromatin remodeling enzyme.

Authors:  Lisa R Racki; Nariman Naber; Ed Pate; John D Leonard; Roger Cooke; Geeta J Narlikar
Journal:  J Mol Biol       Date:  2014-03-04       Impact factor: 5.469

10.  The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Authors:  Lisa R Racki; Janet G Yang; Nariman Naber; Peretz D Partensky; Ashley Acevedo; Thomas J Purcell; Roger Cooke; Yifan Cheng; Geeta J Narlikar
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

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