Literature DB >> 12609886

Thermodynamic properties of the kinesin neck-region docking to the catalytic core.

S Rice1, Y Cui, C Sindelar, N Naber, M Matuska, R Vale, R Cooke.   

Abstract

Kinesin motors move on microtubules by a mechanism that involves a large, ATP-triggered conformational change in which a mechanical element called the neck linker docks onto the catalytic core, making contacts with the core throughout its length. Here, we investigate the thermodynamic properties of this conformational change using electron paramagnetic resonance (EPR) spectroscopy. We placed spin probes at several locations on the human kinesin neck linker and recorded EPR spectra in the presence of microtubules and either 5'-adenylylimidodiphosphate (AMPPNP) or ADP at temperatures of 4-30 degrees C. The free-energy change (DeltaG) associated with AMPPNP-induced docking of the neck linker onto the catalytic core is favorable but small, about 3 kJ/mol. In contrast, the favorable enthalpy change (DeltaH) and unfavorable entropy change (TDeltaS) are quite large, about 50 kJ/mol. A mutation in the neck linker, V331A/N332A, results in an unfavorable DeltaG for AMPPNP-induced zipping of the neck linker onto the core and causes motility defects. These results suggest that the kinesin neck linker folds onto the core from a more unstructured state, thereby paying a large entropic cost and gaining a large amount of enthalpy.

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Year:  2003        PMID: 12609886      PMCID: PMC1302753          DOI: 10.1016/S0006-3495(03)74992-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  Structure of a fast kinesin: implications for ATPase mechanism and interactions with microtubules.

Authors:  Y H Song; A Marx; J Müller; G Woehlke; M Schliwa; A Krebs; A Hoenger; E Mandelkow
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

3.  Monomeric kinesin head domains hydrolyze multiple ATP molecules before release from a microtubule.

Authors:  W Jiang; D D Hackney
Journal:  J Biol Chem       Date:  1997-02-28       Impact factor: 5.157

4.  The directional preference of kinesin motors is specified by an element outside of the motor catalytic domain.

Authors:  R B Case; D W Pierce; N Hom-Booher; C L Hart; R D Vale
Journal:  Cell       Date:  1997-09-05       Impact factor: 41.582

5.  Dimensions of protein random coils.

Authors:  W G Miller; C V Goebel
Journal:  Biochemistry       Date:  1968-11       Impact factor: 3.162

6.  Orientation of spin-labeled myosin heads in glycerinated muscle fibers.

Authors:  D D Thomas; R Cooke
Journal:  Biophys J       Date:  1980-12       Impact factor: 4.033

7.  A structural pathway for activation of the kinesin motor ATPase.

Authors:  M Yun; X Zhang; C G Park; H W Park; S A Endow
Journal:  EMBO J       Date:  2001-06-01       Impact factor: 11.598

8.  Processivity of the motor protein kinesin requires two heads.

Authors:  W O Hancock; J Howard
Journal:  J Cell Biol       Date:  1998-03-23       Impact factor: 10.539

9.  Kinesin takes one 8-nm step for each ATP that it hydrolyzes.

Authors:  D L Coy; M Wagenbach; J Howard
Journal:  J Biol Chem       Date:  1999-02-05       Impact factor: 5.157

10.  Image reconstructions of microtubules decorated with monomeric and dimeric kinesins: comparison with x-ray structure and implications for motility.

Authors:  A Hoenger; S Sack; M Thormählen; A Marx; J Müller; H Gross; E Mandelkow
Journal:  J Cell Biol       Date:  1998-04-20       Impact factor: 10.539

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  46 in total

1.  Kinesin's second step.

Authors:  Lisa M Klumpp; Andreas Hoenger; Susan P Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-25       Impact factor: 11.205

2.  A structural perspective on the dynamics of kinesin motors.

Authors:  Changbong Hyeon; José N Onuchic
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

3.  Kinesins at a glance.

Authors:  Sharyn A Endow; F Jon Kull; Honglei Liu
Journal:  J Cell Sci       Date:  2010-10-15       Impact factor: 5.285

4.  Kinetics of nucleotide-dependent structural transitions in the kinesin-1 hydrolysis cycle.

Authors:  Keith J Mickolajczyk; Nathan C Deffenbaugh; Jaime Ortega Arroyo; Joanna Andrecka; Philipp Kukura; William O Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-16       Impact factor: 11.205

5.  The structural kinetics of switch-1 and the neck linker explain the functions of kinesin-1 and Eg5.

Authors:  Joseph M Muretta; Yonggun Jun; Steven P Gross; Jennifer Major; David D Thomas; Steven S Rosenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-16       Impact factor: 11.205

6.  Nucleotide pocket thermodynamics measured by EPR reveal how energy partitioning relates myosin speed to efficiency.

Authors:  Thomas J Purcell; Nariman Naber; Kathy Franks-Skiba; Alexander R Dunn; Catherine C Eldred; Christopher L Berger; András Málnási-Csizmadia; James A Spudich; Douglas M Swank; Edward Pate; Roger Cooke
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

7.  The tethered motor domain of a kinesin-microtubule complex catalyzes reversible synthesis of bound ATP.

Authors:  David D Hackney
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-09       Impact factor: 11.205

8.  Kinesin's biased stepping mechanism: amplification of neck linker zippering.

Authors:  William H Mather; Ronald F Fox
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

Review 9.  Kinesin motor mechanics: binding, stepping, tracking, gating, and limping.

Authors:  Steven M Block
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

10.  Kinesin is an evolutionarily fine-tuned molecular ratchet-and-pawl device of decisively locked direction.

Authors:  Zhisong Wang; Min Feng; Wenwei Zheng; Dagong Fan
Journal:  Biophys J       Date:  2007-08-03       Impact factor: 4.033

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