Literature DB >> 17003033

Energetics of ligand-induced conformational flexibility in the lactose permease of Escherichia coli.

Yiling Nie1, Irina Smirnova, Vladimir Kasho, H Ronald Kaback.   

Abstract

Isothermal titration calorimetry has been applied to characterize the thermodynamics of ligand binding to wild-type lactose permease (LacY) and a mutant (C154G) that strongly favors an inward facing conformation. The affinity of wild-type or mutant LacY for ligand and the change in free energy (DeltaG) upon binding are similar. However, with the wild type, the change in free energy upon binding is due primarily to an increase in the entropic free energy component (TDeltaS), whereas in marked contrast, an increase in enthalpy (DeltaH) is responsible for DeltaG in the mutant. Thus, wild-type LacY behaves as if there are multiple ligand-bound conformational states, whereas the mutant is severely restricted. The findings also indicate that the structure of the mutant represents a conformational intermediate in the overall transport cycle.

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Year:  2006        PMID: 17003033      PMCID: PMC2793331          DOI: 10.1074/jbc.M607232200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  31 in total

Review 1.  The kamikaze approach to membrane transport.

Authors:  H R Kaback; M Sahin-Tóth; A B Weinglass
Journal:  Nat Rev Mol Cell Biol       Date:  2001-08       Impact factor: 94.444

2.  Structure and mechanism of the lactose permease of Escherichia coli.

Authors:  Jeff Abramson; Irina Smirnova; Vladimir Kasho; Gillian Verner; H Ronald Kaback; So Iwata
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

3.  Monitoring conformational rearrangements in the substrate-binding site of a membrane transport protein by mass spectrometry.

Authors:  Adam Weinglass; Julian P Whitelegge; Kym F Faull; H Ronald Kaback
Journal:  J Biol Chem       Date:  2004-07-21       Impact factor: 5.157

Review 4.  Lessons from lactose permease.

Authors:  Lan Guan; H Ronald Kaback
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

5.  The C-4 hydroxyl group of galactopyranosides is the major determinant for ligand recognition by the lactose permease of Escherichia coli.

Authors:  M Sahin-Tóth; M C Lawrence; T Nishio; H R Kaback
Journal:  Biochemistry       Date:  2001-10-30       Impact factor: 3.162

6.  A mutation in the lactose permease of Escherichia coli that decreases conformational flexibility and increases protein stability.

Authors:  Irina N Smirnova; H Ronald Kaback
Journal:  Biochemistry       Date:  2003-03-18       Impact factor: 3.162

7.  The role of backbone motions in ligand binding to the c-Src SH3 domain.

Authors:  C Wang; N H Pawley; L K Nicholson
Journal:  J Mol Biol       Date:  2001-11-02       Impact factor: 5.469

8.  Ligand recognition by the lactose permease of Escherichia coli: specificity and affinity are defined by distinct structural elements of galactopyranosides.

Authors:  M Sahin-Tóth; K M Akhoon; J Runner; H R Kaback
Journal:  Biochemistry       Date:  2000-05-02       Impact factor: 3.162

9.  Aromatic stacking in the sugar binding site of the lactose permease.

Authors:  Lan Guan; Yonglin Hu; H Ronald Kaback
Journal:  Biochemistry       Date:  2003-02-18       Impact factor: 3.162

10.  Exploiting luminescence spectroscopy to elucidate the interaction between sugar and a tryptophan residue in the lactose permease of Escherichia coli.

Authors:  José Luis Vázquez-Ibar; Lan Guan; Maja Svrakic; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-17       Impact factor: 11.205

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  32 in total

1.  Sugar binding induces the same global conformational change in purified LacY as in the native bacterial membrane.

Authors:  Yiling Nie; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

2.  Opening and closing of the periplasmic gate in lactose permease.

Authors:  Yonggang Zhou; Lan Guan; J Alfredo Freites; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-04       Impact factor: 11.205

3.  Single-molecule FRET reveals sugar-induced conformational dynamics in LacY.

Authors:  Devdoot S Majumdar; Irina Smirnova; Vladimir Kasho; Eyal Nir; Xiangxu Kong; Shimon Weiss; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

4.  Molecular evolution of affinity and flexibility in the immune system.

Authors:  Ian F Thorpe; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-08       Impact factor: 11.205

5.  Apo-intermediate in the transport cycle of lactose permease (LacY).

Authors:  M Gregor Madej; Sonya N Soro; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-24       Impact factor: 11.205

6.  Structure of LacY with an α-substituted galactoside: Connecting the binding site to the protonation site.

Authors:  Hemant Kumar; Janet S Finer-Moore; H Ronald Kaback; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-08       Impact factor: 11.205

7.  The Cys154-->Gly mutation in LacY causes constitutive opening of the hydrophilic periplasmic pathway.

Authors:  Yiling Nie; Frances E Sabetfard; H Ronald Kaback
Journal:  J Mol Biol       Date:  2008-04-11       Impact factor: 5.469

8.  An early event in the transport mechanism of LacY protein: interaction between helices V and I.

Authors:  Yonggang Zhou; M Gregor Madej; Lan Guan; Yiling Nie; H Ronald Kaback
Journal:  J Biol Chem       Date:  2011-07-05       Impact factor: 5.157

9.  Protonation and sugar binding to LacY.

Authors:  Irina N Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-20       Impact factor: 11.205

10.  Basis of substrate binding and conservation of selectivity in the CLC family of channels and transporters.

Authors:  Alessandra Picollo; Mattia Malvezzi; Jon C D Houtman; Alessio Accardi
Journal:  Nat Struct Mol Biol       Date:  2009-11-08       Impact factor: 15.369

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