Literature DB >> 17001088

Implementation of semi-automated cloning and prokaryotic expression screening: the impact of SPINE.

Pedro M Alzari1, H Berglund, N S Berrow, E Blagova, D Busso, C Cambillau, V Campanacci, E Christodoulou, S Eiler, M J Fogg, G Folkers, A Geerlof, D Hart, A Haouz, M D Herman, S Macieira, P Nordlund, A Perrakis, S Quevillon-Cheruel, F Tarandeau, H van Tilbeurgh, T Unger, M P A Luna-Vargas, M Velarde, M Willmanns, Raymond J Owens.   

Abstract

The implementation of high-throughput (HTP) cloning and expression screening in Escherichia coli by 14 laboratories in the Structural Proteomics In Europe (SPINE) consortium is described. Cloning efficiencies of greater than 80% have been achieved for the three non-ligation-based cloning techniques used, namely Gateway, ligation-indendent cloning of PCR products (LIC-PCR) and In-Fusion, with LIC-PCR emerging as the most cost-effective. On average, two constructs have been made for each of the approximately 1700 protein targets selected by SPINE for protein production. Overall, HTP expression screening in E. coli has yielded 32% soluble constructs, with at least one for 70% of the targets. In addition to the implementation of HTP cloning and expression screening, the development of two novel technologies is described, namely library-based screening for soluble constructs and parallel small-scale high-density fermentation.

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Year:  2006        PMID: 17001088     DOI: 10.1107/S0907444906029775

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  29 in total

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Authors:  Thomas S Walter; Erika J Mancini; Jan Kadlec; Stephen C Graham; René Assenberg; Jingshan Ren; Sarah Sainsbury; Raymond J Owens; David I Stuart; Jonathan M Grimes; Karl Harlos
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Authors:  Pablo Sobrado; Michael A Goren; Declan James; Carissa K Amundson; Brian G Fox
Journal:  Protein Expr Purif       Date:  2007-12-15       Impact factor: 1.650

Review 5.  Protein production and purification.

Authors:  Susanne Gräslund; Pär Nordlund; Johan Weigelt; B Martin Hallberg; James Bray; Opher Gileadi; Stefan Knapp; Udo Oppermann; Cheryl Arrowsmith; Raymond Hui; Jinrong Ming; Sirano dhe-Paganon; Hee-won Park; Alexei Savchenko; Adelinda Yee; Aled Edwards; Renaud Vincentelli; Christian Cambillau; Rosalind Kim; Sung-Hou Kim; Zihe Rao; Yunyu Shi; Thomas C Terwilliger; Chang-Yub Kim; Li-Wei Hung; Geoffrey S Waldo; Yoav Peleg; Shira Albeck; Tamar Unger; Orly Dym; Jaime Prilusky; Joel L Sussman; Ray C Stevens; Scott A Lesley; Ian A Wilson; Andrzej Joachimiak; Frank Collart; Irina Dementieva; Mark I Donnelly; William H Eschenfeldt; Youngchang Kim; Lucy Stols; Ruying Wu; Min Zhou; Stephen K Burley; J Spencer Emtage; J Michael Sauder; Devon Thompson; Kevin Bain; John Luz; Tarun Gheyi; Fred Zhang; Shane Atwell; Steven C Almo; Jeffrey B Bonanno; Andras Fiser; Sivasubramanian Swaminathan; F William Studier; Mark R Chance; Andrej Sali; Thomas B Acton; Rong Xiao; Li Zhao; Li Chung Ma; John F Hunt; Liang Tong; Kellie Cunningham; Masayori Inouye; Stephen Anderson; Heleema Janjua; Ritu Shastry; Chi Kent Ho; Dongyan Wang; Huang Wang; Mei Jiang; Gaetano T Montelione; David I Stuart; Raymond J Owens; Susan Daenke; Anja Schütz; Udo Heinemann; Shigeyuki Yokoyama; Konrad Büssow; Kristin C Gunsalus
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Journal:  Extremophiles       Date:  2007-06-13       Impact factor: 2.395

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-04-05

8.  Flexi vector cloning.

Authors:  Paul G Blommel; Peter A Martin; Kory D Seder; Russell L Wrobel; Brian G Fox
Journal:  Methods Mol Biol       Date:  2009

9.  An NMR study of the interaction of the N-terminal cytoplasmic tail of the Wilson disease protein with copper(I)-HAH1.

Authors:  Lucia Banci; Ivano Bertini; Francesca Cantini; Chiara Massagni; Manuele Migliardi; Antonio Rosato
Journal:  J Biol Chem       Date:  2009-01-30       Impact factor: 5.157

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Authors:  Cornelia Ludwig; Martin A Wear; Malcolm D Walkinshaw
Journal:  Protein Expr Purif       Date:  2009-12-06       Impact factor: 1.650

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