Literature DB >> 16997139

Shape Signatures: speeding up computer aided drug discovery.

Peter J Meek1, ZhiWei Liu, LiFeng Tian, Ching Y Wang, William J Welsh, Randy J Zauhar.   

Abstract

Identifying potential lead molecules is becoming a more automated process. We review Shape Signatures, a tool that is effective and easy to use compared with most computer aided drug design techniques. Laboratory researchers can apply this in silico technique cost-effectively without the need for specialized computer backgrounds. Identifying a potential lead molecule requires database screening, and this becomes rate-limiting once the database becomes too large. The use of Shape Signatures eliminates this concern and offers molecule screening rates that are in advance of any currently available method. Shape Signatures provides a conduit for researchers to conduct rapid identification of potential active molecules, and studies with this tool can be initiated with only one bioactive lead or receptor site.

Mesh:

Year:  2006        PMID: 16997139     DOI: 10.1016/j.drudis.2006.08.014

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  17 in total

1.  Avalanche for shape and feature-based virtual screening with 3D alignment.

Authors:  David J Diller; Nancy D Connell; William J Welsh
Journal:  J Comput Aided Mol Des       Date:  2015-10-12       Impact factor: 3.686

2.  Identification of previously unrecognized antiestrogenic chemicals using a novel virtual screening approach.

Authors:  Ching Y Wang; Ni Ai; Sonia Arora; Eric Erenrich; Karthigeyan Nagarajan; Randy Zauhar; Douglas Young; William J Welsh
Journal:  Chem Res Toxicol       Date:  2006-12       Impact factor: 3.739

3.  Shape signatures: new descriptors for predicting cardiotoxicity in silico.

Authors:  Dmitriy S Chekmarev; Vladyslav Kholodovych; Konstantin V Balakin; Yan Ivanenkov; Sean Ekins; William J Welsh
Journal:  Chem Res Toxicol       Date:  2008-05-08       Impact factor: 3.739

4.  New predictive models for blood-brain barrier permeability of drug-like molecules.

Authors:  Sandhya Kortagere; Dmitriy Chekmarev; William J Welsh; Sean Ekins
Journal:  Pharm Res       Date:  2008-04-16       Impact factor: 4.200

5.  Polyester monomers lack ability to bind and activate both androgenic and estrogenic receptors as determined by in vitro and in silico methods.

Authors:  Thomas G Osimitz; William J Welsh; Ni Ai; Colleen Toole
Journal:  Food Chem Toxicol       Date:  2014-10-28       Impact factor: 6.023

6.  Evolving carbapenemases: can medicinal chemists advance one step ahead of the coming storm?

Authors:  Peter Oelschlaeger; Ni Ai; Kevin T Duprez; William J Welsh; Jeffrey H Toney
Journal:  J Med Chem       Date:  2010-04-22       Impact factor: 7.446

7.  Predicting inhibitors of acetylcholinesterase by regression and classification machine learning approaches with combinations of molecular descriptors.

Authors:  Dmitriy Chekmarev; Vladyslav Kholodovych; Sandhya Kortagere; William J Welsh; Sean Ekins
Journal:  Pharm Res       Date:  2009-07-15       Impact factor: 4.200

8.  Application of screening methods, shape signatures and engineered biosensors in early drug discovery process.

Authors:  Izabela Hartman; Alison R Gillies; Sonia Arora; Christina Andaya; Nitya Royapet; William J Welsh; David W Wood; Randy J Zauhar
Journal:  Pharm Res       Date:  2009-07-22       Impact factor: 4.200

9.  Molecular similarity methods for predicting cross-reactivity with therapeutic drug monitoring immunoassays.

Authors:  Matthew D Krasowski; Mohamed G Siam; Manisha Iyer; Sean Ekins
Journal:  Ther Drug Monit       Date:  2009-06       Impact factor: 3.681

10.  Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information.

Authors:  Iurii Sushko; Sergii Novotarskyi; Robert Körner; Anil Kumar Pandey; Matthias Rupp; Wolfram Teetz; Stefan Brandmaier; Ahmed Abdelaziz; Volodymyr V Prokopenko; Vsevolod Y Tanchuk; Roberto Todeschini; Alexandre Varnek; Gilles Marcou; Peter Ertl; Vladimir Potemkin; Maria Grishina; Johann Gasteiger; Christof Schwab; Igor I Baskin; Vladimir A Palyulin; Eugene V Radchenko; William J Welsh; Vladyslav Kholodovych; Dmitriy Chekmarev; Artem Cherkasov; Joao Aires-de-Sousa; Qing-You Zhang; Andreas Bender; Florian Nigsch; Luc Patiny; Antony Williams; Valery Tkachenko; Igor V Tetko
Journal:  J Comput Aided Mol Des       Date:  2011-06-10       Impact factor: 3.686

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