Literature DB >> 16987920

Authenticated DNA from ancient wood remains.

Sascha Liepelt1, Christoph Sperisen, Marie-France Deguilloux, Remy J Petit, Roy Kissling, Matthew Spencer, Jacques-Louis de Beaulieu, Pierre Taberlet, Ludovic Gielly, Birgit Ziegenhagen.   

Abstract

BACKGROUND: The reconstruction of biological processes and human activities during the last glacial cycle relies mainly on data from biological remains. Highly abundant tissues, such as wood, are candidates for a genetic analysis of past populations. While well-authenticated DNA has now been recovered from various fossil remains, the final 'proof' is still missing for wood, despite some promising studies. SCOPE: The goal of this study was to determine if ancient wood can be analysed routinely in studies of archaeology and palaeogenetics. An experiment was designed which included blind testing, independent replicates, extensive contamination controls and rigorous statistical tests. Ten samples of ancient wood from major European forest tree genera were analysed with plastid DNA markers.
CONCLUSIONS: Authentic DNA was retrieved from wood samples up to 1,000 years of age. A new tool for real-time vegetation history and archaeology is ready to use.

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Year:  2006        PMID: 16987920      PMCID: PMC3292245          DOI: 10.1093/aob/mcl188

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  15 in total

1.  Amplification of oak DNA from ancient and modern wood.

Authors:  S Dumolin-Lapègue; M H Pemonge; L Gielly; P Taberlet; R J Petit
Journal:  Mol Ecol       Date:  1999-12       Impact factor: 6.185

Review 2.  Ancient DNA.

Authors:  M Hofreiter; D Serre; H N Poinar; M Kuch; S Pääbo
Journal:  Nat Rev Genet       Date:  2001-05       Impact factor: 53.242

3.  Novel perspectives in wood certification and forensics: dry wood as a source of DNA.

Authors:  Marie-France Deguilloux; Marie-Hélène Pemonge; Rémy J Petit
Journal:  Proc Biol Sci       Date:  2002-05-22       Impact factor: 5.349

4.  Authenticity of ancient-DNA results: a statistical approach.

Authors:  Matthew Spencer; Christopher J Howe
Journal:  Am J Hum Genet       Date:  2004-06-15       Impact factor: 11.025

Review 5.  Ancient plant DNA: review and prospects.

Authors:  Felix Gugerli; Laura Parducci; Rémy J Petit
Journal:  New Phytol       Date:  2005-05       Impact factor: 10.151

Review 6.  Ancient DNA.

Authors:  Eske Willerslev; Alan Cooper
Journal:  Proc Biol Sci       Date:  2005-01-07       Impact factor: 5.349

7.  Assessing ancient DNA studies.

Authors:  M Thomas P Gilbert; Hans-Jürgen Bandelt; Michael Hofreiter; Ian Barnes
Journal:  Trends Ecol Evol       Date:  2005-07-21       Impact factor: 17.712

8.  DNA sequence from a fossil pollen of Abies spp. from Pleistocene peat.

Authors:  Y Suyama; K Kawamuro; I Kinoshita; K Yoshimura; Y Tsumura; H Takahara
Journal:  Genes Genet Syst       Date:  1996-06       Impact factor: 1.517

9.  A blind testing design for authenticating ancient DNA sequences.

Authors:  H Yang; E M Golenberg; J Shoshani
Journal:  Mol Phylogenet Evol       Date:  1997-04       Impact factor: 4.286

10.  Nuclear gene sequences and DNA variation of Cryptomeria japonica samples from the postglacial period.

Authors:  Naoki Tani; Yoshihiko Tsumura; Hitoshi Sato
Journal:  Mol Ecol       Date:  2003-04       Impact factor: 6.185

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  8 in total

1.  Wood identification with PCR targeting noncoding chloroplast DNA.

Authors:  Xiaoshu Tang; Guangjie Zhao; Liyan Ping
Journal:  Plant Mol Biol       Date:  2011-10-26       Impact factor: 4.076

2.  How to integrate wet lab and bioinformatics procedures for wine DNA admixture analysis and compositional profiling: Case studies and perspectives.

Authors:  Rita Vignani; Pietro Liò; Monica Scali
Journal:  PLoS One       Date:  2019-02-12       Impact factor: 3.240

3.  Molecular database for classifying Shorea species (Dipterocarpaceae) and techniques for checking the legitimacy of timber and wood products.

Authors:  Yoshihiko Tsumura; Tomoyuki Kado; Kazumasa Yoshida; Hisashi Abe; Masato Ohtani; Yuriko Taguchi; Yoko Fukue; Naoki Tani; Saneyoshi Ueno; Kensuke Yoshimura; Koichi Kamiya; Ko Harada; Yayoi Takeuchi; Bibian Diway; Reiner Finkeldey; Mohamad Na'iem; Sapto Indrioko; Kevin Kit Siong Ng; Norwati Muhammad; Soon Leong Lee
Journal:  J Plant Res       Date:  2010-05-15       Impact factor: 2.629

Review 4.  Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles.

Authors:  Eleanor Joan Green; Camilla F Speller
Journal:  Genes (Basel)       Date:  2017-07-13       Impact factor: 4.096

5.  Not stealing from the treasure chest (or just a bit): Analyses on plant derived writing supports and non-invasive DNA sampling.

Authors:  Anna Schulz; Silke Lautner; Jörg Fromm; Markus Fischer
Journal:  PLoS One       Date:  2018-06-06       Impact factor: 3.240

Review 6.  Molecular genetic tools to infer the origin of forest plants and wood.

Authors:  Reiner Finkeldey; Ludger Leinemann; Oliver Gailing
Journal:  Appl Microbiol Biotechnol       Date:  2009-11-13       Impact factor: 4.813

7.  High-Throughput DNA sequencing of ancient wood.

Authors:  Stefanie Wagner; Frédéric Lagane; Andaine Seguin-Orlando; Mikkel Schubert; Thibault Leroy; Erwan Guichoux; Emilie Chancerel; Inger Bech-Hebelstrup; Vincent Bernard; Cyrille Billard; Yves Billaud; Matthias Bolliger; Christophe Croutsch; Katarina Čufar; Frédérique Eynaud; Karl Uwe Heussner; Joachim Köninger; Fabien Langenegger; Frédéric Leroy; Christine Lima; Nicoletta Martinelli; Garry Momber; André Billamboz; Oliver Nelle; Antoni Palomo; Raquel Piqué; Marianne Ramstein; Roswitha Schweichel; Harald Stäuble; Willy Tegel; Xavier Terradas; Florence Verdin; Christophe Plomion; Antoine Kremer; Ludovic Orlando
Journal:  Mol Ecol       Date:  2018-03-03       Impact factor: 6.185

Review 8.  Genome Sequencing of Ancient Plant Remains: Findings, Uses and Potential Applications for the Study and Improvement of Modern Crops.

Authors:  Antimo Di Donato; Edgardo Filippone; Maria R Ercolano; Luigi Frusciante
Journal:  Front Plant Sci       Date:  2018-04-17       Impact factor: 5.753

  8 in total

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