Literature DB >> 16701432

Assessing ancient DNA studies.

M Thomas P Gilbert1, Hans-Jürgen Bandelt, Michael Hofreiter, Ian Barnes.   

Abstract

The study of ancient DNA has the potential to make significant and unique contributions to ecology and evolution. However, the techniques used contain inherent problems, particularly with regards to the generation of authentic and useful data. The solution currently advocated to reduce contamination and artefactual results is to adopt criteria for authentication. Nevertheless, these criteria are not foolproof, and we believe that they have, in practice, replaced the use of thought and prudence when designing and executing ancient DNA studies. We argue here that researchers in this field must take a more cognitive and self-critical approach. Specifically, in place of checking criteria off lists, researchers must explain, in sufficient enough detail to dispel doubt, how the data were obtained, and why they should be believed to be authentic.

Year:  2005        PMID: 16701432     DOI: 10.1016/j.tree.2005.07.005

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  131 in total

1.  A Bayesian phylogenetic method to estimate unknown sequence ages.

Authors:  Beth Shapiro; Simon Y W Ho; Alexei J Drummond; Marc A Suchard; Oliver G Pybus; Andrew Rambaut
Journal:  Mol Biol Evol       Date:  2010-10-01       Impact factor: 16.240

2.  Authenticated DNA from ancient wood remains.

Authors:  Sascha Liepelt; Christoph Sperisen; Marie-France Deguilloux; Remy J Petit; Roy Kissling; Matthew Spencer; Jacques-Louis de Beaulieu; Pierre Taberlet; Ludovic Gielly; Birgit Ziegenhagen
Journal:  Ann Bot       Date:  2006-09-20       Impact factor: 4.357

3.  A statistical approach to identify ancient template DNA.

Authors:  Agnar Helgason; Snaebjörn Pálsson; Carles Lalueza-Fox; Shyamali Ghosh; Sigrún Sigurdardóttir; Adam Baker; Birgir Hrafnkelsson; Lilja Arnadóttir; Unnur Thorsteinsdóttir; Kári Stefánsson
Journal:  J Mol Evol       Date:  2007-06-25       Impact factor: 2.395

4.  Estimation of 2Nes from temporal allele frequency data.

Authors:  Jonathan P Bollback; Thomas L York; Rasmus Nielsen
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

5.  Multilocus genotypes from Charles Darwin's finches: biodiversity lost since the voyage of the Beagle.

Authors:  Kenneth Petren; Peter R Grant; B Rosemary Grant; Andrew A Clack; Ninnia V Lescano
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-12       Impact factor: 6.237

6.  Whole genome amplification and microsatellite genotyping of herbarium DNA revealed the identity of an ancient grapevine cultivar.

Authors:  Nenad Malenica; Silvio Simon; Višnja Besendorfer; Edi Maletić; Jasminka Karoglan Kontić; Ivan Pejić
Journal:  Naturwissenschaften       Date:  2011-07-22

7.  True single-molecule DNA sequencing of a pleistocene horse bone.

Authors:  Ludovic Orlando; Aurelien Ginolhac; Maanasa Raghavan; Julia Vilstrup; Morten Rasmussen; Kim Magnussen; Kathleen E Steinmann; Philipp Kapranov; John F Thompson; Grant Zazula; Duane Froese; Ida Moltke; Beth Shapiro; Michael Hofreiter; Khaled A S Al-Rasheid; M Thomas P Gilbert; Eske Willerslev
Journal:  Genome Res       Date:  2011-07-29       Impact factor: 9.043

8.  Genotype of a historic strain of Mycobacterium tuberculosis.

Authors:  Abigail S Bouwman; Sandra L Kennedy; Romy Müller; Richard H Stephens; Malin Holst; Anwen C Caffell; Charlotte A Roberts; Terence A Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

9.  Ancient DNA provides new insights into the history of south Siberian Kurgan people.

Authors:  Christine Keyser; Caroline Bouakaze; Eric Crubézy; Valery G Nikolaev; Daniel Montagnon; Tatiana Reis; Bertrand Ludes
Journal:  Hum Genet       Date:  2009-05-16       Impact factor: 4.132

10.  Origin of celiac disease: how old are predisposing haplotypes?

Authors:  Giovanni Gasbarrini; Olga Rickards; Cristina Martínez-Labarga; Elsa Pacciani; Filiberto Chilleri; Lucrezia Laterza; Giuseppe Marangi; Franco Scaldaferri; Antonio Gasbarrini
Journal:  World J Gastroenterol       Date:  2012-10-07       Impact factor: 5.742

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