Literature DB >> 16986619

Multiple equilibria in complex chemical reaction networks: extensions to entrapped species models.

G Craciun1, M Feinberg.   

Abstract

In two earlier papers, means were provided to decide the capacity of complex chemical reaction networks, taken with mass-action kinetics, to admit multiple equilibria in the context of the isothermal homogeneous continuous flow stirred tank reactor (CFSTR). In such a reactor, all species are deemed to be in the outflow, a fact which has an important bearing on the nature of the governing equations. In contrast, one can imagine CFSTR-like models of the cell in which certain large molecules (e.g., enzymes) remain entrapped within the cell, whereas smaller ones (e.g., metabolites) are free to diffuse through the cell boundary. Although such models bear a strong physical resemblance to the classical CFSTR picture, there are substantive differences in the corresponding mathematics. Without a presumption of mass-action kinetics, this research is intended to indicate a general way in which results about uniqueness of equilibria in the classical CFSTR context extend to entrapped species models.

Mesh:

Year:  2006        PMID: 16986619     DOI: 10.1049/ip-syb:20050093

Source DB:  PubMed          Journal:  Syst Biol (Stevenage)        ISSN: 1741-2471


  13 in total

1.  Enzyme-sharing as a cause of multi-stationarity in signalling systems.

Authors:  Elisenda Feliu; Carsten Wiuf
Journal:  J R Soc Interface       Date:  2011-11-02       Impact factor: 4.118

2.  Graph-theoretic criteria for injectivity and unique equilibria in general chemical reaction systems.

Authors:  Murad Banaji; Gheorghe Craciun
Journal:  Adv Appl Math       Date:  2010-02-01       Impact factor: 0.848

3.  Understanding bistability in complex enzyme-driven reaction networks.

Authors:  Gheorghe Craciun; Yangzhong Tang; Martin Feinberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-30       Impact factor: 11.205

4.  Graph-theoretic methods for the analysis of chemical and biochemical networks. I. Multistability and oscillations in ordinary differential equation models.

Authors:  Maya Mincheva; Marc R Roussel
Journal:  J Math Biol       Date:  2007-05-31       Impact factor: 2.259

5.  Simplifying biochemical models with intermediate species.

Authors:  Elisenda Feliu; Carsten Wiuf
Journal:  J R Soc Interface       Date:  2013-07-24       Impact factor: 4.118

6.  Constraints on reciprocal flux sensitivities in biochemical reaction networks.

Authors:  Guy Shinar; Avi Mayo; Haixia Ji; Martin Feinberg
Journal:  Biophys J       Date:  2011-03-16       Impact factor: 4.033

Review 7.  Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions.

Authors:  Carsten Conradi; Anne Shiu
Journal:  Biophys J       Date:  2018-02-06       Impact factor: 4.033

8.  Oscillations and bistability in a model of ERK regulation.

Authors:  Nida Obatake; Anne Shiu; Xiaoxian Tang; Angélica Torres
Journal:  J Math Biol       Date:  2019-07-25       Impact factor: 2.259

9.  Steady state detection of chemical reaction networks using a simplified analytical method.

Authors:  Ivan Martínez-Forero; Antonio Peláez-López; Pablo Villoslada
Journal:  PLoS One       Date:  2010-06-03       Impact factor: 3.240

10.  Concordant chemical reaction networks and the Species-Reaction Graph.

Authors:  Guy Shinar; Martin Feinberg
Journal:  Math Biosci       Date:  2012-08-21       Impact factor: 2.144

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.