Literature DB >> 16968906

Unraveling the dynamic transcriptome.

Siobhan M Brady1, Terri A Long, Philip N Benfey.   

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Year:  2006        PMID： 16968906      PMCID： PMC1560917          DOI： 10.1105/tpc.105.037572

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


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  74 in total

1.  Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells.

Authors:  Taku Demura; Gen Tashiro; Gorou Horiguchi; Naoki Kishimoto; Minoru Kubo; Naoko Matsuoka; Atsushi Minami; Miyo Nagata-Hiwatashi; Keiko Nakamura; Yoshimichi Okamura; Naomi Sassa; Shinsuke Suzuki; Junshi Yazaki; Shoshi Kikuchi; Hiroo Fukuda
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-18       Impact factor: 11.205

2.  Coordinated plant defense responses in Arabidopsis revealed by microarray analysis.

Authors:  P M Schenk; K Kazan; I Wilson; J P Anderson; T Richmond; S C Somerville; J M Manners
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-10       Impact factor: 11.205

3.  Genomic identification of direct target genes of LEAFY.

Authors:  Dilusha A William; Yanhui Su; Michael R Smith; Meina Lu; Don A Baldwin; Doris Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-21       Impact factor: 11.205

4.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

5.  A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription.

Authors:  Yuling Jiao; Peixin Jia; Xiangfeng Wang; Ning Su; Shuliang Yu; Dongfen Zhang; Ligeng Ma; Qi Feng; Zhaoqing Jin; Lei Li; Yongbiao Xue; Zhukuan Cheng; Hongyu Zhao; Bin Han; Xing Wang Deng
Journal:  Plant Cell       Date:  2005-04-29       Impact factor: 11.277

6.  A novel, high-performance random array platform for quantitative gene expression profiling.

Authors:  Kenneth Kuhn; Shawn C Baker; Eugene Chudin; Minh-Ha Lieu; Steffen Oeser; Holly Bennett; Philippe Rigault; David Barker; Timothy K McDaniel; Mark S Chee
Journal:  Genome Res       Date:  2004-11       Impact factor: 9.043

7.  Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth.

Authors:  Chih-Wei Tung; Kathleen G Dwyer; Mikhail E Nasrallah; June B Nasrallah
Journal:  Plant Physiol       Date:  2005-05-13       Impact factor: 8.340

8.  Development and evaluation of an Arabidopsis whole genome Affymetrix probe array.

Authors:  Julia C Redman; Brian J Haas; Gene Tanimoto; Christopher D Town
Journal:  Plant J       Date:  2004-05       Impact factor: 6.417

9.  Evidence for large domains of similarly expressed genes in the Drosophila genome.

Authors:  Paul T Spellman; Gerald M Rubin
Journal:  J Biol       Date:  2002-06-18

10.  Profiling ethylene-regulated gene expression in Arabidopsis thaliana by microarray analysis.

Authors:  Guang Yan Zhong; Guang Van Zhong; Jacqueline K Burns
Journal:  Plant Mol Biol       Date:  2003-09       Impact factor: 4.076
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  11 in total

Review 1.  Plant transcriptomics and responses to environmental stress: an overview.

Authors:  Sameen Ruqia Imadi; Alvina Gul Kazi; Mohammad Abass Ahanger; Salih Gucel; Parvaiz Ahmad
Journal:  J Genet       Date:  2015-09       Impact factor: 1.166

Review 2.  Systems approaches to identifying gene regulatory networks in plants.

Authors:  Terri A Long; Siobhan M Brady; Philip N Benfey
Journal:  Annu Rev Cell Dev Biol       Date:  2008       Impact factor: 13.827

3.  Systems biology update: cell type-specific transcriptional regulatory networks.

Authors:  Li Pu; Siobhan Brady
Journal:  Plant Physiol       Date:  2009-12-04       Impact factor: 8.340

4.  In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed.

Authors:  Ganesh Kumar Agrawal; Martin Hajduch; Katherine Graham; Jay J Thelen
Journal:  Plant Physiol       Date:  2008-07-03       Impact factor: 8.340

5.  Genome-wide patterns of Arabidopsis gene expression in nature.

Authors:  Christina L Richards; Ulises Rosas; Joshua Banta; Naeha Bhambhra; Michael D Purugganan
Journal:  PLoS Genet       Date:  2012-04-19       Impact factor: 5.917

6.  Genetic dissection of the developmental behaviours of plant height in wheat under diverse water regimes.

Authors:  Xianshan Wu; Zhenghang Wang; Xiaoping Chang; Ruilian Jing
Journal:  J Exp Bot       Date:  2010-05-24       Impact factor: 6.992

7.  MADS-complexes regulate transcriptome dynamics during pollen maturation.

Authors:  Wim Verelst; David Twell; Stefan de Folter; Richard Immink; Heinz Saedler; Thomas Münster
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

8.  Identifying Stable Reference Genes for qRT-PCR Normalisation in Gene Expression Studies of Narrow-Leafed Lupin (Lupinus angustifolius L.).

Authors:  Candy M Taylor; Ricarda Jost; William Erskine; Matthew N Nelson
Journal:  PLoS One       Date:  2016-02-12       Impact factor: 3.240

9.  Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome.

Authors:  Hyun-Jin Kim; Kwang-Hyun Baek; Seung-Won Lee; JungEun Kim; Bong-Woo Lee; Hye-Sun Cho; Woo Taek Kim; Doil Choi; Cheol-Goo Hur
Journal:  BMC Plant Biol       Date:  2008-10-09       Impact factor: 4.215

10.  Using a periclinal chimera to unravel layer-specific gene expression in plants.

Authors:  Ioannis Filippis; Rosa Lopez-Cobollo; James Abbott; Sarah Butcher; Gerard J Bishop
Journal:  Plant J       Date:  2013-07-19       Impact factor: 6.417
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