Literature DB >> 26440096

Plant transcriptomics and responses to environmental stress: an overview.

Sameen Ruqia Imadi1, Alvina Gul Kazi, Mohammad Abass Ahanger, Salih Gucel, Parvaiz Ahmad.   

Abstract

Different stresses include nutrient deficiency, pathogen attack, exposure to toxic chemicals etc. Transcriptomic studies have been mainly applied to only a few plant species including the model plant, Arabidopsis thaliana. These studies have provided valuable insights into the genetic networks of plant stress responses. Transcriptomics applied to cash crops including barley, rice, sugarcane, wheat and maize have further helped in understanding physiological and molecular responses in terms of genome sequence, gene regulation, gene differentiation, posttranscriptional modifications and gene splicing. On the other hand, comparative transcriptomics has provided more information about plant's response to diverse stresses. Thus, transcriptomics, together with other biotechnological approaches helps in development of stress tolerance in crops against the climate change.

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Year:  2015        PMID: 26440096     DOI: 10.1007/s12041-015-0545-6

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  116 in total

1.  Mechanisms of progressive water deficit tolerance and growth recovery of Chinese maize foundation genotypes Huangzao 4 and Chang 7-2, which are proposed on the basis of comparison of physiological and transcriptomic responses.

Authors:  Youzhi Li; Changbin Sun; Zhangbao Huang; Jianlong Pan; Liang Wang; Xianwei Fan
Journal:  Plant Cell Physiol       Date:  2009-12       Impact factor: 4.927

2.  The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize.

Authors:  Nardjis Amiour; Sandrine Imbaud; Gilles Clément; Nicolas Agier; Michel Zivy; Benoît Valot; Thierry Balliau; Patrick Armengaud; Isabelle Quilleré; Rafael Cañas; Thérèse Tercet-Laforgue; Bertrand Hirel
Journal:  J Exp Bot       Date:  2012-09       Impact factor: 6.992

3.  Deficiency in plastidic glutamine synthetase alters proline metabolism and transcriptomic response in Lotus japonicus under drought stress.

Authors:  Pedro Díaz; Marco Betti; Diego H Sánchez; Michael K Udvardi; Jorge Monza; Antonio J Márquez
Journal:  New Phytol       Date:  2010-08-26       Impact factor: 10.151

4.  Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging.

Authors:  Xiling Zou; Yuanyuan Jiang; Lei Liu; Zuxin Zhang; Yonglian Zheng
Journal:  BMC Plant Biol       Date:  2010-08-25       Impact factor: 4.215

5.  Steam-girdling of barley (Hordeum vulgare) leaves leads to carbohydrate accumulation and accelerated leaf senescence, facilitating transcriptomic analysis of senescence-associated genes.

Authors:  David L Parrott; Kate McInnerney; Urs Feller; Andreas M Fischer
Journal:  New Phytol       Date:  2007       Impact factor: 10.151

6.  Plastid transcriptomics and translatomics of tomato fruit development and chloroplast-to-chromoplast differentiation: chromoplast gene expression largely serves the production of a single protein.

Authors:  Sabine Kahlau; Ralph Bock
Journal:  Plant Cell       Date:  2008-04-25       Impact factor: 11.277

Review 7.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

8.  Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.

Authors:  Yi Wang; Wen-Zheng Zhang; Lian-Fen Song; Jun-Jie Zou; Zhen Su; Wei-Hua Wu
Journal:  Plant Physiol       Date:  2008-09-05       Impact factor: 8.340

9.  Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat.

Authors:  Wayne Crismani; Ute Baumann; Tim Sutton; Neil Shirley; Tracie Webster; German Spangenberg; Peter Langridge; Jason A Able
Journal:  BMC Genomics       Date:  2006-10-19       Impact factor: 3.969

10.  Proteomics and transcriptomics of broccoli subjected to exogenously supplied and transgenic senescence-induced cytokinin for amelioration of postharvest yellowing.

Authors:  Mao-Sen Liu; Hui-Chun Li; Ying-Mi Lai; Hsiao-Feng Lo; Long-Fang O Chen
Journal:  J Proteomics       Date:  2013-05-23       Impact factor: 4.044

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  13 in total

1.  Epigenetic regulation: another layer in plant nutrition.

Authors:  David Séré; Antoine Martin
Journal:  Plant Signal Behav       Date:  2019-11-01

2.  Physiological and Molecular Approaches for Developing Thermotolerance in Vegetable Crops: A Growth, Yield and Sustenance Perspective.

Authors:  Shikha Chaudhary; Poonam Devi; Bindumadhava HanumanthaRao; Uday Chand Jha; Kamal Dev Sharma; P V Vara Prasad; Shiv Kumar; Kadambot H M Siddique; Harsh Nayyar
Journal:  Front Plant Sci       Date:  2022-06-28       Impact factor: 6.627

3.  Alternative respiration pathway is involved in the response of highland barley to salt stress.

Authors:  Qiang He; Xiaomin Wang; Li He; Lei Yang; Shengwang Wang; Yurong Bi
Journal:  Plant Cell Rep       Date:  2018-12-12       Impact factor: 4.570

4.  Comparative analysis of drought-responsive and -adaptive genes in Chinese wingnut (Pterocarya stenoptera C. DC).

Authors:  Yong Li; Yu-Tao Si; Yan-Xia He; Jia-Xin Li
Journal:  BMC Genomics       Date:  2021-03-04       Impact factor: 3.969

5.  Transcriptional profiling of sugarcane leaves and roots under progressive osmotic stress reveals a regulated coordination of gene expression in a spatiotemporal manner.

Authors:  Alejandro Pereira-Santana; Edyciel J Alvarado-Robledo; Jesus A Zamora-Briseño; Jorge T Ayala-Sumuano; Victor M Gonzalez-Mendoza; Francisco Espadas-Gil; Luis D Alcaraz; Enrique Castaño; Miguel A Keb-Llanes; Felipe Sanchez-Teyer; Luis Carlos Rodriguez-Zapata
Journal:  PLoS One       Date:  2017-12-11       Impact factor: 3.240

6.  Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites.

Authors:  Dimitrios J Floros; Daniel Petras; Clifford A Kapono; Alexey V Melnik; Tie-Jun Ling; Rob Knight; Pieter C Dorrestein
Journal:  Front Plant Sci       Date:  2017-03-29       Impact factor: 5.753

7.  Large-scale Proteomics Combined with Transgenic Experiments Demonstrates An Important Role of Jasmonic Acid in Potassium Deficiency Response in Wheat and Rice.

Authors:  Gezi Li; Yufang Wu; Guoyu Liu; Xianghong Xiao; Pengfei Wang; Tian Gao; Mengjun Xu; Qiaoxia Han; Yonghua Wang; Tiancai Guo; Guozhang Kang
Journal:  Mol Cell Proteomics       Date:  2017-08-18       Impact factor: 5.911

8.  Transcriptome Analysis Reveals Potential Roles of Abscisic Acid and Polyphenols in Adaptation of Onobrychis viciifolia to Extreme Environmental Conditions in the Qinghai-Tibetan Plateau.

Authors:  Hengxia Yin; Huakun Zhou; Wenying Wang; Lam-Son Phan Tran; Benyin Zhang
Journal:  Biomolecules       Date:  2020-06-26

9.  Identification of wheat stress-responding genes and TaPR-1-1 function by screening a cDNA yeast library prepared following abiotic stress.

Authors:  Jingyi Wang; Xinguo Mao; Ruitong Wang; Ang Li; Guangyao Zhao; Jinfeng Zhao; Ruilian Jing
Journal:  Sci Rep       Date:  2019-01-15       Impact factor: 4.379

Review 10.  How to Choose a Good Marker to Analyze the Olive Germplasm (Olea europaea L.) and Derived Products.

Authors:  Sara Sion; Michele Antonio Savoia; Susanna Gadaleta; Luciana Piarulli; Isa Mascio; Valentina Fanelli; Cinzia Montemurro; Monica Marilena Miazzi
Journal:  Genes (Basel)       Date:  2021-09-23       Impact factor: 4.096

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