Literature DB >> 16956681

Advances in cereal genomics and applications in crop breeding.

Rajeev K Varshney1, David A Hoisington, Akhilesh K Tyagi.   

Abstract

Recent advances in cereal genomics have made it possible to analyse the architecture of cereal genomes and their expressed components, leading to an increase in our knowledge of the genes that are linked to key agronomically important traits. These studies have used molecular genetic mapping of quantitative trait loci (QTL) of several complex traits that are important in breeding. The identification and molecular cloning of genes underlying QTLs offers the possibility to examine the naturally occurring allelic variation for respective complex traits. Novel alleles, identified by functional genomics or haplotype analysis, can enrich the genetic basis of cultivated crops to improve productivity. Advances made in cereal genomics research in recent years thus offer the opportunities to enhance the prediction of phenotypes from genotypes for cereal breeding.

Mesh:

Year:  2006        PMID: 16956681     DOI: 10.1016/j.tibtech.2006.08.006

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  67 in total

1.  A high density barley microsatellite consensus map with 775 SSR loci.

Authors:  R K Varshney; T C Marcel; L Ramsay; J Russell; M S Röder; N Stein; R Waugh; P Langridge; R E Niks; A Graner
Journal:  Theor Appl Genet       Date:  2007-03-08       Impact factor: 5.699

Review 2.  Molecular plant breeding as the foundation for 21st century crop improvement.

Authors:  Stephen P Moose; Rita H Mumm
Journal:  Plant Physiol       Date:  2008-07       Impact factor: 8.340

Review 3.  Emerging knowledge from genome sequencing of crop species.

Authors:  Delfina Barabaschi; Davide Guerra; Katia Lacrima; Paolo Laino; Vania Michelotti; Simona Urso; Giampiero Valè; Luigi Cattivelli
Journal:  Mol Biotechnol       Date:  2012-03       Impact factor: 2.695

4.  Can genomics boost productivity of orphan crops?

Authors:  Rajeev K Varshney; Jean-Marcel Ribaut; Edward S Buckler; Roberto Tuberosa; J Antoni Rafalski; Peter Langridge
Journal:  Nat Biotechnol       Date:  2012-12       Impact factor: 54.908

5.  The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers.

Authors:  Shi Ying Yang; Rachit K Saxena; Pawan L Kulwal; Gavin J Ash; Anuja Dubey; John D I Harper; Hari D Upadhyaya; Ragini Gothalwal; Andrzej Kilian; Rajeev K Varshney
Journal:  J Genet       Date:  2011-04       Impact factor: 1.166

6.  TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.

Authors:  Keiichi Mochida; Takuhiro Yoshida; Tetsuya Sakurai; Yasunari Ogihara; Kazuo Shinozaki
Journal:  Plant Physiol       Date:  2009-05-15       Impact factor: 8.340

7.  Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome.

Authors:  Spurthi N Nayak; Hongyan Zhu; Nicy Varghese; Subhojit Datta; Hong-Kyu Choi; Ralf Horres; Ruth Jüngling; Jagbir Singh; P B Kavi Kishor; S Sivaramakrishnan; Dave A Hoisington; Günter Kahl; Peter Winter; Douglas R Cook; Rajeev K Varshney
Journal:  Theor Appl Genet       Date:  2010-01-23       Impact factor: 5.699

8.  The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.).

Authors:  Nikku L Raju; Belaghihalli N Gnanesh; Pazhamala Lekha; Balaji Jayashree; Suresh Pande; Pavana J Hiremath; Munishamappa Byregowda; Nagendra K Singh; Rajeev K Varshney
Journal:  BMC Plant Biol       Date:  2010-03-11       Impact factor: 4.215

9.  A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.).

Authors:  Y P Khedikar; M V C Gowda; C Sarvamangala; K V Patgar; H D Upadhyaya; R K Varshney
Journal:  Theor Appl Genet       Date:  2010-06-06       Impact factor: 5.699

10.  SNP discovery and linkage map construction in cultivated tomato.

Authors:  Kenta Shirasawa; Sachiko Isobe; Hideki Hirakawa; Erika Asamizu; Hiroyuki Fukuoka; Daniel Just; Christophe Rothan; Shigemi Sasamoto; Tsunakazu Fujishiro; Yoshie Kishida; Mitsuyo Kohara; Hisano Tsuruoka; Tsuyuko Wada; Yasukazu Nakamura; Shusei Sato; Satoshi Tabata
Journal:  DNA Res       Date:  2010-11-02       Impact factor: 4.458

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