Literature DB >> 21677394

The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers.

Shi Ying Yang1, Rachit K Saxena, Pawan L Kulwal, Gavin J Ash, Anuja Dubey, John D I Harper, Hari D Upadhyaya, Ragini Gothalwal, Andrzej Kilian, Rajeev K Varshney.   

Abstract

With an objective to develop a genetic map in pigeon pea (Cajanus spp.), a total of 554 diversity arrays technology (DArT) markers showed polymorphism in a pigeon pea F(2) mapping population of 72 progenies derived from an interspecific cross of ICP 28 (Cajanus cajan) and ICPW 94 (Cajanus scarabaeoides). Approximately 13% of markers did not conform to expected segregation ratio. The total number of DArT marker loci segregating in Mendelian manner was 405 with 73.1% (P > 0.001) of DArT markers having unique segregation patterns. Two groups of genetic maps were generated using DArT markers. While the maternal genetic linkage map had 122 unique DArT maternal marker loci, the paternal genetic linkage map has a total of 172 unique DArT paternal marker loci. The length of these two maps covered 270.0 cM and 451.6 cM, respectively. These are the first genetic linkage maps developed for pigeon pea, and this is the first report of genetic mapping in any grain legume using diversity arrays technology.

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Year:  2011        PMID： 21677394     DOI： 10.1007/s12041-011-0050-5

Source DB:  PubMed          Journal:  J Genet        ISSN： 0022-1333            Impact factor:   1.166


  22 in total

1.  Genome mapping in capsicum and the evolution of genome structure in the solanaceae.

Authors:  K D Livingstone; V K Lackney; J R Blauth; R van Wijk; M K Jahn
Journal:  Genetics       Date:  1999-07       Impact factor: 4.562

2.  High density molecular linkage maps of the tomato and potato genomes.

Authors:  S D Tanksley; M W Ganal; J P Prince; M C de Vicente; M W Bonierbale; P Broun; T M Fulton; J J Giovannoni; S Grandillo; G B Martin
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

3.  Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana.

Authors:  Alexander H J Wittenberg; Theo van der Lee; Cyril Cayla; Andrzej Kilian; Richard G F Visser; Henk J Schouten
Journal:  Mol Genet Genomics       Date:  2005-07-16       Impact factor: 3.291

Review 4.  Orphan legume crops enter the genomics era!

Authors:  Rajeev K Varshney; Timothy J Close; Nagendra K Singh; David A Hoisington; Douglas R Cook
Journal:  Curr Opin Plant Biol       Date:  2009-01-20       Impact factor: 7.834

5.  Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice.

Authors:  Ning Jiang; Zhirong Bao; Svetlana Temnykh; Zhukuan Cheng; Jiming Jiang; Rod A Wing; Susan R McCouch; Susan R Wessler
Journal:  Genetics       Date:  2002-07       Impact factor: 4.562

6.  Linkage mapping in tetraploid willows: segregation of molecular markers and estimation of linkage phases support an allotetraploid structure for Salix alba x Salix fragilis interspecific hybrids.

Authors:  G Barcaccia; S Meneghetti; E Albertini; L Triest; M Lucchin
Journal:  Heredity (Edinb)       Date:  2003-02       Impact factor: 3.821

7.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.

Authors:  E S Lander; P Green; J Abrahamson; A Barlow; M J Daly; S E Lincoln; L A Newberg; L Newburg
Journal:  Genomics       Date:  1987-10       Impact factor: 5.736

8.  A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci.

Authors:  Niels Sandal; Lene Krusell; Simona Radutoiu; Magdalena Olbryt; Andrea Pedrosa; Silke Stracke; Shusei Sato; Tomohiko Kato; Satoshi Tabata; Martin Parniske; Andreas Bachmair; Tina Ketelsen; Jens Stougaard
Journal:  Genetics       Date:  2002-08       Impact factor: 4.562

9.  Development and assessment of microarray-based DNA fingerprinting in Eucalyptus grandis.

Authors:  Sabine Lezar; A A Myburg; D K Berger; M J Wingfield; B D Wingfield
Journal:  Theor Appl Genet       Date:  2004-07-29       Impact factor: 5.699

10.  Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).

Authors:  R K Varshney; R V Penmetsa; S Dutta; P L Kulwal; R K Saxena; S Datta; T R Sharma; B Rosen; N Carrasquilla-Garcia; A D Farmer; A Dubey; K B Saxena; J Gao; B Fakrudin; M N Singh; B P Singh; K B Wanjari; M Yuan; R K Srivastava; A Kilian; H D Upadhyaya; N Mallikarjuna; C D Town; G E Bruening; G He; G D May; R McCombie; S A Jackson; N K Singh; D R Cook
Journal:  Mol Breed       Date:  2009-09-17       Impact factor: 2.589
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  19 in total

1.  Analysis of genetic diversity in pigeon pea germplasm using retrotransposon-based molecular markers.

Authors:  Kailash C Upadhyaya
Journal:  J Genet       Date:  2017-09       Impact factor: 1.166

2.  Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea.

Authors:  Rachit K Saxena; Sandip Kale; Reyazul Rouf Mir; Nalini Mallikarjuna; Pooja Yadav; Roma Rani Das; Johiruddin Molla; Muniswamy Sonnappa; Anuradha Ghanta; Yamini Narasimhan; Abhishek Rathore; C V Sameer Kumar; Rajeev K Varshney
Journal:  Theor Appl Genet       Date:  2019-12-16       Impact factor: 5.699

Review 3.  Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies.

Authors:  Rajeev K Varshney; Himabindu Kudapa; Manish Roorkiwal; Mahendar Thudi; Manish K Pandey; Rachit K Saxena; Siva K Chamarthi; S Murali Mohan; Nalini Mallikarjuna; Hari Upadhyaya; Pooran M Gaur; L Krishnamurthy; K B Saxena; Shyam N Nigam; Suresh Pande
Journal:  J Biosci       Date:  2012-11       Impact factor: 1.826

Review 4.  Genetics and breeding for climate change in Orphan crops.

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Journal:  Theor Appl Genet       Date:  2021-01-23       Impact factor: 5.699

5.  Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.).

Authors:  Mahendar Thudi; Abhishek Bohra; Spurthi N Nayak; Nicy Varghese; Trushar M Shah; R Varma Penmetsa; Nepolean Thirunavukkarasu; Srivani Gudipati; Pooran M Gaur; Pawan L Kulwal; Hari D Upadhyaya; Polavarapu B Kavikishor; Peter Winter; Günter Kahl; Christopher D Town; Andrzej Kilian; Douglas R Cook; Rajeev K Varshney
Journal:  PLoS One       Date:  2011-11-15       Impact factor: 3.240

Review 6.  Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan).

Authors:  Lekha Pazhamala; Rachit K Saxena; Vikas K Singh; C V Sameerkumar; Vinay Kumar; Pallavi Sinha; Kishan Patel; Jimmy Obala; Seleman R Kaoneka; P Tongoona; Hussein A Shimelis; N V P R Gangarao; Damaris Odeny; Abhishek Rathore; P S Dharmaraj; K N Yamini; Rajeev K Varshney
Journal:  Front Plant Sci       Date:  2015-02-17       Impact factor: 5.753

7.  Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome.

Authors:  César D Petroli; Carolina P Sansaloni; Jason Carling; Dorothy A Steane; René E Vaillancourt; Alexander A Myburg; Orzenil Bonfim da Silva; Georgios Joannis Pappas; Andrzej Kilian; Dario Grattapaglia
Journal:  PLoS One       Date:  2012-09-11       Impact factor: 3.240

8.  Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes.

Authors:  Rachit K Saxena; R Varma Penmetsa; Hari D Upadhyaya; Ashish Kumar; Noelia Carrasquilla-Garcia; Jessica A Schlueter; Andrew Farmer; Adam M Whaley; Birinchi K Sarma; Gregory D May; Douglas R Cook; Rajeev K Varshney
Journal:  DNA Res       Date:  2012-10-26       Impact factor: 4.458

9.  Genetic diversity and demographic history of Cajanus spp. illustrated from genome-wide SNPs.

Authors:  Rachit K Saxena; Eric von Wettberg; Hari D Upadhyaya; Vanessa Sanchez; Serah Songok; Kulbhushan Saxena; Paul Kimurto; Rajeev K Varshney
Journal:  PLoS One       Date:  2014-02-12       Impact factor: 3.240

10.  Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches.

Authors:  Mahendar Thudi; Hari D Upadhyaya; Abhishek Rathore; Pooran Mal Gaur; Lakshmanan Krishnamurthy; Manish Roorkiwal; Spurthi N Nayak; Sushil Kumar Chaturvedi; Partha Sarathi Basu; N V P R Gangarao; Asnake Fikre; Paul Kimurto; Prakash C Sharma; M S Sheshashayee; Satoshi Tobita; Junichi Kashiwagi; Osamu Ito; Andrzej Killian; Rajeev Kumar Varshney
Journal:  PLoS One       Date:  2014-05-06       Impact factor: 3.240
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