Literature DB >> 16939402

Quantitative trait loci for BMD identified by autosome-wide linkage scan to chromosomes 7q and 21q in men from the Amish Family Osteoporosis Study.

Elizabeth A Streeten1, Daniel J McBride, Toni I Pollin, Kathy Ryan, Jay Shapiro, Sandy Ott, Braxton D Mitchell, Alan R Shuldiner, Jeffery R O'Connell.   

Abstract

UNLABELLED: Using autosome-wide linkage analysis in 964 Amish, strong evidence was found for the presence of genes affecting hip and spine BMD in men on chromosomes 7q31 and 21q22 (LOD = 4.15 and 3.36, respectively).
INTRODUCTION: BMD is highly heritable, with genetic factors accounting for 60-88% of variation. The goal of this study was to localize genes contributing to BMD variation.
MATERIALS AND METHODS: The Amish Family Osteoporosis Study was designed to identify genes affecting bone health. The Amish are a genetically closed population with a homogeneous lifestyle. BMD was measured at the spine, hip, and radius using DXA in 964 participants (mean age, 50.2 +/- 16.3 [SD] years; range, 18-99 years) from large multigenerational families. Genotyping of 731 highly polymorphic microsatellite markers (average spacing of 5.4 cM) and autosome-wide multipoint linkage analysis were performed.
RESULTS: In the overall study population, no strong evidence for linkage was detected to any chromosomal region (peak LOD: 2.11 for radius BMD on chromosome 3q26). In a subgroup analysis of men (n = 371), strong evidence was detected for a quantitative trait locus (QTL) influencing BMD variation on chromosome 7q31 at the total hip (LOD = 4.15) and femoral neck (LOD = 3.09) and for a second QTL influencing spine BMD at 21q22 (LOD = 3.36). Suggestive evidence of linkage was found in men for a QTL at 12q24 affecting total hip BMD (LOD = 2.60) and at 18p11 for femoral neck (LOD = 2.07), and in women (n = 593) at 1p36 for femoral neck BMD (LOD = 2.02) and at 1q21 for spine BMD (LOD = 2.11). In age subgroup analyses, suggestive evidence for linkage was found for those <50 years of age (n = 521) on chromosomes 11q22 and 14q23 (LODs = 2.11 and 2.16, respectively) and for those >50 years of age (n = 443) on 3p25.2 (LOD = 2.32).
CONCLUSIONS: These results strongly suggest the presence of genes affecting hip and spine BMD in men on chromosomes 7q31 and 21q22. Modest evidence was found for genes affecting BMD in women on chromosomes 1p36 and 1q21 and in men at 12q24, replicating results from other populations.

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Year:  2006        PMID: 16939402     DOI: 10.1359/jbmr.060602

Source DB:  PubMed          Journal:  J Bone Miner Res        ISSN: 0884-0431            Impact factor:   6.741


  30 in total

1.  A common variant in fibroblast growth factor binding protein 1 (FGFBP1) is associated with bone mineral density and influences gene expression in vitro.

Authors:  Nicole Hoppman; John C McLenithan; Daniel J McBride; Haiqing Shen; Jan Bruder; Richard L Bauer; John R Shaffer; Jie Liu; Elizabeth A Streeten; Alan R Shuldiner; Candace M Kammerer; Braxton D Mitchell
Journal:  Bone       Date:  2010-05-05       Impact factor: 4.398

2.  Bone mineral density is linked to 1p36 and 7p15-13 in a southern Chinese population.

Authors:  Hoi Yee Gloria Li; Wai Chee Annie Kung; Qing Yang Huang
Journal:  J Bone Miner Metab       Date:  2010-07-06       Impact factor: 2.626

3.  High resolution linkage and linkage disequilibrium analyses of chromosome 1p36 SNPs identify new positional candidate genes for low bone mineral density.

Authors:  H Zhang; K Sol-Church; H Rydbeck; D Stabley; L D Spotila; M Devoto
Journal:  Osteoporos Int       Date:  2008-07-03       Impact factor: 4.507

Review 4.  Neural phenotypes of common and rare genetic variants.

Authors:  Carrie E Bearden; David C Glahn; Agatha D Lee; Ming-Chang Chiang; Theo G M van Erp; Tyrone D Cannon; Allan L Reiss; Arthur W Toga; Paul M Thompson
Journal:  Biol Psychol       Date:  2008-02-23       Impact factor: 3.251

5.  Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.

Authors:  Enda M Byrne; Uttam K Raheja; Sarah H Stephens; Andrew C Heath; Pamela A F Madden; Dipika Vaswani; Gagan V Nijjar; Kathleen A Ryan; Hassaan Youssufi; Philip R Gehrman; Alan R Shuldiner; Nicholas G Martin; Grant W Montgomery; Naomi R Wray; Elliot C Nelson; Braxton D Mitchell; Teodor T Postolache
Journal:  J Clin Psychiatry       Date:  2015-02       Impact factor: 4.384

6.  Multiple quantitative trait loci for cortical and trabecular bone regulation map to mid-distal mouse chromosome 4 that shares linkage homology to human chromosome 1p36.

Authors:  Wesley G Beamer; Kathryn L Shultz; Harold F Coombs; Lindsay G Horton; Leah Rae Donahue; Clifford J Rosen
Journal:  J Bone Miner Res       Date:  2012-01       Impact factor: 6.741

7.  Sex-specific genetic loci for femoral neck bone mass and strength identified in inbred COP and DA rats.

Authors:  Imranul Alam; Qiwei Sun; Lixiang Liu; Daniel L Koller; Lucinda G Carr; Michael J Econs; Tatiana Foroud; Charles H Turner
Journal:  J Bone Miner Res       Date:  2008-06       Impact factor: 6.741

8.  PedHunter 2.0 and its usage to characterize the founder structure of the Old Order Amish of Lancaster County.

Authors:  Woei-Jyh Lee; Toni I Pollin; Jeffrey R O'Connell; Richa Agarwala; Alejandro A Schäffer
Journal:  BMC Med Genet       Date:  2010-05-02       Impact factor: 2.103

9.  Extent and distribution of linkage disequilibrium in the Old Order Amish.

Authors:  Cristopher V Van Hout; Albert M Levin; Evadnie Rampersaud; Haiqing Shen; Jeffrey R O'Connell; Braxton D Mitchell; Alan R Shuldiner; Julie A Douglas
Journal:  Genet Epidemiol       Date:  2010-02       Impact factor: 2.135

10.  Genome-wide analyses of gene expression during mouse endochondral ossification.

Authors:  Claudine G James; Lee-Anne Stanton; Hanga Agoston; Veronica Ulici; T Michael Underhill; Frank Beier
Journal:  PLoS One       Date:  2010-01-13       Impact factor: 3.240

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