Literature DB >> 16936025

Identification and characterization of the Bacillus thuringiensis phaZ gene, encoding new intracellular poly-3-hydroxybutyrate depolymerase.

Chi-Ling Tseng1, Hui-Ju Chen, Gwo-Chyuan Shaw.   

Abstract

A gene that codes for a novel intracellular poly-3-hydroxybutyrate (PHB) depolymerase has now been identified in the genome of Bacillus thuringiensis subsp. israelensis ATCC 35646. This gene, previously annotated as a hypothetical 3-oxoadipate enol-lactonase (PcaD) gene and now designated phaZ, encodes a protein that shows no significant similarity with any known PHB depolymerase. Purified His-tagged PhaZ could efficiently degrade trypsin-activated native PHB granules as well as artificial amorphous PHB granules and release 3-hydroxybutyrate monomer as a hydrolytic product, but it could not hydrolyze denatured semicrystalline PHB. In contrast, purified His-tagged PcaD of Pseudomonas putida was unable to degrade trypsin-activated native PHB granules and artificial amorphous PHB granules. The B. thuringiensis PhaZ was inactive against p-nitrophenylpalmitate, tributyrin, and triolein. Sonication supernatants of the wild-type B. thuringiensis cells exhibited a PHB-hydrolyzing activity in vitro, whereas those prepared from a phaZ mutant lost this activity. The phaZ mutant showed a higher PHB content than the wild type at late stationary phase of growth in a nutrient-rich medium, indicating that this PhaZ can function as a PHB depolymerase in vivo. PhaZ contains a lipase box-like sequence (G-W-S(102)-M-G) but lacks a signal peptide. A purified His-tagged S102A variant had lost the PHB-hydrolyzing activity. Taken together, these results indicate that B. thuringiensis harbors a new type of intracellular PHB depolymerase.

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Year:  2006        PMID: 16936025      PMCID: PMC1636284          DOI: 10.1128/JB.00729-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  37 in total

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Journal:  Biochim Biophys Acta       Date:  1998-05-11

2.  Polyhydroxyalkanoate inclusion body-associated proteins and coding region in Bacillus megaterium.

Authors:  G J McCool; M C Cannon
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

3.  PhaC and PhaR are required for polyhydroxyalkanoic acid synthase activity in Bacillus megaterium.

Authors:  G J McCool; M C Cannon
Journal:  J Bacteriol       Date:  2001-07       Impact factor: 3.490

4.  Decomposition of poly-beta-hydroxybutyrate by pseudomonads.

Authors:  F P Delafield; M Doudoroff; N J Palleroni; C J Lusty; R Contopoulos
Journal:  J Bacteriol       Date:  1965-11       Impact factor: 3.490

5.  Hydrolysis of native poly(hydroxybutyrate) granules (PHB), crystalline PHB, and artificial amorphous PHB granules by intracellular and extracellular depolymerases.

Authors:  J M Merrick; R Steger; D Dombroski
Journal:  Int J Biol Macromol       Date:  1999 Jun-Jul       Impact factor: 6.953

6.  Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

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Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

Review 7.  Degradation of microbial polyesters.

Authors:  Yutaka Tokiwa; Buenaventurada P Calabia
Journal:  Biotechnol Lett       Date:  2004-08       Impact factor: 2.461

Review 8.  Bacterial lipases.

Authors:  K E Jaeger; S Ransac; B W Dijkstra; C Colson; M van Heuvel; O Misset
Journal:  FEMS Microbiol Rev       Date:  1994-09       Impact factor: 16.408

9.  Ralstonia eutropha H16 encodes two and possibly three intracellular Poly[D-(-)-3-hydroxybutyrate] depolymerase genes.

Authors:  Gregory M York; Joachim Lupberger; Jiamin Tian; Adam G Lawrence; JoAnne Stubbe; Anthony J Sinskey
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

10.  Distinct clpP genes control specific adaptive responses in Bacillus thuringiensis.

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Journal:  J Bacteriol       Date:  2002-10       Impact factor: 3.490

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  16 in total

1.  Poly(3-hydroxybutyrate) (PHB) depolymerase PhaZa1 is involved in mobilization of accumulated PHB in Ralstonia eutropha H16.

Authors:  Keiichi Uchino; Terumi Saito; Dieter Jendrossek
Journal:  Appl Environ Microbiol       Date:  2007-12-21       Impact factor: 4.792

Review 2.  Polyhydroxyalkanoate granules are complex subcellular organelles (carbonosomes).

Authors:  Dieter Jendrossek
Journal:  J Bacteriol       Date:  2009-03-06       Impact factor: 3.490

3.  Identification and characterization of a novel intracellular poly(3-hydroxybutyrate) depolymerase from Bacillus megaterium.

Authors:  Hui-Ju Chen; Shih-Chuan Pan; Gwo-Chyuan Shaw
Journal:  Appl Environ Microbiol       Date:  2009-06-26       Impact factor: 4.792

4.  Identification and characterization of the intracellular poly-3-hydroxybutyrate depolymerase enzyme PhaZ of Sinorhizobium meliloti.

Authors:  Maria A Trainer; David Capstick; Alicja Zachertowska; Kathy N Lam; Scott R D Clark; Trevor C Charles
Journal:  BMC Microbiol       Date:  2010-03-27       Impact factor: 3.605

5.  Identification and characterization of a novel class of extracellular poly(3-hydroxybutyrate) depolymerase from Bacillus sp. strain NRRL B-14911.

Authors:  Wan-Ting Ma; Ju-Hui Lin; Hui-Ju Chen; Syuan-Yi Chen; Gwo-Chyuan Shaw
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

6.  Biodegradation of poly(ε-caprolactone) (PCL) by a new Penicillium oxalicum strain DSYD05-1.

Authors:  Fan Li; Dan Yu; Xiumei Lin; Dongbo Liu; Hongmei Xia; Shan Chen
Journal:  World J Microbiol Biotechnol       Date:  2012-06-19       Impact factor: 3.312

7.  To be or not to be a poly(3-hydroxybutyrate) (PHB) depolymerase: PhaZd1 (PhaZ6) and PhaZd2 (PhaZ7) of Ralstonia eutropha, highly active PHB depolymerases with no detectable role in mobilization of accumulated PHB.

Authors:  Anna Sznajder; Dieter Jendrossek
Journal:  Appl Environ Microbiol       Date:  2014-06-06       Impact factor: 4.792

8.  A patatin-like protein associated with the polyhydroxyalkanoate (PHA) granules of Haloferax mediterranei acts as an efficient depolymerase in the degradation of native PHA.

Authors:  Guiming Liu; Jing Hou; Shuangfeng Cai; Dahe Zhao; Lei Cai; Jing Han; Jian Zhou; Hua Xiang
Journal:  Appl Environ Microbiol       Date:  2015-02-20       Impact factor: 4.792

9.  The metabolic regulation of sporulation and parasporal crystal formation in Bacillus thuringiensis revealed by transcriptomics and proteomics.

Authors:  Jieping Wang; Han Mei; Cao Zheng; Hongliang Qian; Cui Cui; Yang Fu; Jianmei Su; Ziduo Liu; Ziniu Yu; Jin He
Journal:  Mol Cell Proteomics       Date:  2013-02-12       Impact factor: 5.911

10.  Crystallization and preliminary crystallographic analysis of poly(3-hydroxybutyrate) depolymerase from Bacillus thuringiensis.

Authors:  Yung Lin Wang; Yi Ting Lin; Chia Lin Chen; Gwo Chyuan Shaw; Shwu Huey Liaw
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-25       Impact factor: 1.056

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