Literature DB >> 16929553

Proton transfer 200 years after von Grotthuss: insights from ab initio simulations.

Dominik Marx1.   

Abstract

In the last decade, ab initio simulations and especially Car-Parrinello molecular dynamics have significantly contributed to the improvement of our understanding of both the physical and chemical properties of water, ice, and hydrogen-bonded systems in general. At the heart of this family of in silico techniques lies the crucial idea of computing the many-body interactions by solving the electronic structure problem "on the fly" as the simulation proceeds, which circumvents the need for pre-parameterized potential models. In particular, the field of proton transfer in hydrogen-bonded networks greatly benefits from these technical advances. Here, several systems of seemingly quite different nature and of increasing complexity, such as Grotthuss diffusion in water, excited-state proton-transfer in solution, phase transitions in ice, and protonated water networks in the membrane protein bacteriorhodopsin, are discussed in the realms of a unifying viewpoint.

Entities:  

Year:  2006        PMID: 16929553     DOI: 10.1002/cphc.200600128

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  71 in total

1.  Dissecting the THz spectrum of liquid water from first principles via correlations in time and space.

Authors:  Matthias Heyden; Jian Sun; Stefan Funkner; Gerald Mathias; Harald Forbert; Martina Havenith; Dominik Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

2.  Proton conduction: hopping along hydrogen bonds.

Authors:  Rodolphe Vuilleumier; Daniel Borgis
Journal:  Nat Chem       Date:  2012-05-22       Impact factor: 24.427

3.  Proton transfer through the water gossamer.

Authors:  Ali Hassanali; Federico Giberti; Jérôme Cuny; Thomas D Kühne; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-18       Impact factor: 11.205

4.  Probing the mechanisms of proton transfer in liquid water.

Authors:  Edelsys Codorniu-Hernández; Peter G Kusalik
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-08       Impact factor: 11.205

5.  Structural evolution of protein-biofilms: Simulations and experiments.

Authors:  Y Schmitt; H Hähl; C Gilow; H Mantz; K Jacobs; O Leidinger; M Bellion; L Santen
Journal:  Biomicrofluidics       Date:  2010-09-30       Impact factor: 2.800

6.  Intrinsic reactivity and driving force dependence in concerted proton-electron transfers to water illustrated by phenol oxidation.

Authors:  Julien Bonin; Cyrille Costentin; Cyril Louault; Marc Robert; Mathilde Routier; Jean-Michel Savéant
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-05       Impact factor: 11.205

7.  Lagrangian formulation with dissipation of Born-Oppenheimer molecular dynamics using the density-functional tight-binding method.

Authors:  Guishan Zheng; Anders M N Niklasson; Martin Karplus
Journal:  J Chem Phys       Date:  2011-07-28       Impact factor: 3.488

8.  Proton transfer reaction and intermolecular interactions in associates of 2,5-dihydroxy-1,8-naphthyridine.

Authors:  Borys Ośmiałowski
Journal:  J Mol Model       Date:  2011-07-30       Impact factor: 1.810

9.  A delocalized proton-binding site within a membrane protein.

Authors:  Steffen Wolf; Erik Freier; Klaus Gerwert
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

10.  Assessing the native state conformational distribution of ubiquitin by peptide acidity.

Authors:  Griselda Hernández; Janet S Anderson; David M LeMaster
Journal:  Biophys Chem       Date:  2010-10-15       Impact factor: 2.352

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