Literature DB >> 16138302

Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy.

Hashim M Al-Hashimi1.   

Abstract

The ever-increasing cellular roles ascribed to RNA raise fundamental questions regarding how a biopolymer composed of only four chemically similar building-block nucleotides achieves such functional diversity. Here, I discuss how RNA achieves added mechanistic and chemical complexity by undergoing highly controlled conformational changes in response to a variety of cellular signals. I examine pathways for achieving selectivity in these conformational changes that rely to different extents on the structure and dynamics of RNA. Finally, I review solution-state NMR techniques that can be used to characterize RNA structural dynamics and its relationship to function.

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Year:  2005        PMID: 16138302     DOI: 10.1002/cbic.200500002

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  25 in total

Review 1.  RNA Structural Differentiation: Opportunities with Pattern Recognition.

Authors:  Christopher S Eubanks; Amanda E Hargrove
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  Fragmentation of oligoribonucleotides from gas-phase ion-electron reactions.

Authors:  Jiong Yang; Kristina Håkansson
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-26       Impact factor: 3.109

3.  Structural plasticity and Mg2+ binding properties of RNase P P4 from combined analysis of NMR residual dipolar couplings and motionally decoupled spin relaxation.

Authors:  Melissa M Getz; Andy J Andrews; Carol A Fierke; Hashim M Al-Hashimi
Journal:  RNA       Date:  2006-12-28       Impact factor: 4.942

4.  Prediction of molecular alignment of nucleic acids in aligned media.

Authors:  Bin Wu; Michael Petersen; Frederic Girard; Marco Tessari; Sybren S Wijmenga
Journal:  J Biomol NMR       Date:  2006-05-23       Impact factor: 2.835

5.  Protein backbone dynamics through 13C'-13Calpha cross-relaxation in NMR spectroscopy.

Authors:  Fabien Ferrage; Philippe Pelupessy; David Cowburn; Geoffrey Bodenhausen
Journal:  J Am Chem Soc       Date:  2006-08-30       Impact factor: 15.419

6.  Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings.

Authors:  Catherine Musselman; Stephen W Pitt; Kush Gulati; Lesley L Foster; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  J Biomol NMR       Date:  2006-11-01       Impact factor: 2.835

7.  Analyzing the flexibility of RNA structures by constraint counting.

Authors:  Simone Fulle; Holger Gohlke
Journal:  Biophys J       Date:  2008-02-15       Impact factor: 4.033

8.  Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition.

Authors:  Anette Casiano-Negroni; Xiaoyan Sun; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2007-05-09       Impact factor: 3.162

9.  Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling.

Authors:  James E Johnson; Charles G Hoogstraten
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

10.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

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