Literature DB >> 16924559

Multipole electrostatic potential derived atomic charges in NDDO-methods with spd-basis sets.

Anselm H C Horn1, Timothy Clark.   

Abstract

The recently introduced multipole approach for computing the molecular electrostatic potential (MEP) within the semiempirical neglect of diatomic differential overlap (NDDO) framework [Horn AHC, Lin Jr-H., Clark T (2005) Theor Chem Acc 114:159-168] has been used to obtain atomic charges of nearly ab initio quality by scaling the semiempirical MEP. The parameterization set comprised a total of 797 compounds and included not only the newly parameterized AM1* elements Al, Si, P, S, Cl, Ti, Zr, and Mo but also the standard AM1 elements H, C, N, O and F. For comparison, the ZDO-approximated MEP was also calculated analytically in the spd-basis. For the AM1*-optimized structures, single-point calculations at the B3LYP, HF and MP2 levels with the 6-31G(d) and LanL2DZP basis sets were performed to obtain the MEP. The regression analysis of all 12 combinations of semiempirical and ab initio MEP data yielded correlation coefficients of at least 0.99 in all cases. Scaling the analytical and multipole-derived semiempirical MEP by the regression coefficients yielded mean unsigned errors below 2.6 and 1.9 kcal mol(-1), respectively. Subsequently, for 22 drug molecules from the World Drug Index, atomic charges were computed according to the RESP procedure using XX/6-31G(d) (XX=B3LYP, HF, MP2) and scaled AM1* multipole MEP; the correlation coefficients obtained are 0.83, 0.85 and 0.83, respectively.

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Year:  2006        PMID: 16924559     DOI: 10.1007/s00894-006-0137-8

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  7 in total

1.  Descriptors, physical properties, and drug-likeness.

Authors:  Matthias Brüstle; Bernd Beck; Torsten Schindler; William King; Timothy Mitchell; Timothy Clark
Journal:  J Med Chem       Date:  2002-08-01       Impact factor: 7.446

2.  AMBER force-field parameters for phosphorylated amino acids in different protonation states: phosphoserine, phosphothreonine, phosphotyrosine, and phosphohistidine.

Authors:  Nadine Homeyer; Anselm H C Horn; Harald Lanig; Heinrich Sticht
Journal:  J Mol Model       Date:  2005-10-21       Impact factor: 1.810

3.  Transition-state effects of ionic liquids in substitution reactions of Pt(II) complexes.

Authors:  Christian F Weber; Ralph Puchta; Nico J R van Eikema Hommes; Peter Wasserscheid; Rudi van Eldik
Journal:  Angew Chem Int Ed Engl       Date:  2005-09-19       Impact factor: 15.336

4.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

5.  AM1* parameters for aluminum, silicon, titanium and zirconium.

Authors:  Paul Winget; Timothy Clark
Journal:  J Mol Model       Date:  2005-08-19       Impact factor: 1.810

6.  Molecular Dynamics Simulations of HIV-1 Protease Suggest Different Mechanisms Contributing to Drug Resistance.

Authors:  Florian Wartha; Anselm H C Horn; Heike Meiselbach; Heinrich Sticht
Journal:  J Chem Theory Comput       Date:  2005-03       Impact factor: 6.006

7.  AM1* parameters for phosphorus, sulfur and chlorine.

Authors:  Paul Winget; Anselm H C Horn; Cenk Selçuki; Bodo Martin; Timothy Clark
Journal:  J Mol Model       Date:  2003-09-04       Impact factor: 1.810

  7 in total
  1 in total

1.  A consistent force field parameter set for zwitterionic amino acid residues.

Authors:  Anselm H C Horn
Journal:  J Mol Model       Date:  2014-10-24       Impact factor: 1.810

  1 in total

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