Literature DB >> 12955599

AM1* parameters for phosphorus, sulfur and chlorine.

Paul Winget1, Anselm H C Horn, Cenk Selçuki, Bodo Martin, Timothy Clark.   

Abstract

An extension of the AM1 semiempirical molecular orbital technique, AM1*, is introduced. AM1* uses AM1 parameters and theory unchanged for the elements H, C, N, O and F. The elements P, S and Cl have been reparameterized using an additional set of d orbitals in the basis set and with two-center core-core parameters, rather than the Gaussian functions used to modify the core-core potential in AM1. Voityuk and Rösch's AM1(d) parameters have been adopted unchanged for AM1* with the exception that new core-core parameters are defined for Mo-P, Mo-S and Mo-Cl interactions. Thus, AM1* gives identical results to AM1 for compounds with only H, C, N, O, and F, AM1(d) for compounds containing Mo, H, C, N, O and F only, but differs for molybdenum compounds containing P, S or Cl. The performance and typical errors of AM1* are discussed.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12955599     DOI: 10.1007/s00894-003-0156-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  5 in total

Review 1.  New developments in applying quantum mechanics to proteins.

Authors:  V Gogonea; D Suárez; A van der Vaart; K M Merz
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  Ambiphilicity: a characteristic reactivity principle of pi-bound phosphorus heterocycles.

Authors:  Christian Topf; Timothy Clark; Frank W Heinemann; Matthias Hennemann; Susanne Kummer; Hans Pritzkow; Ulrich Zenneck
Journal:  Angew Chem Int Ed Engl       Date:  2002-11-04       Impact factor: 15.336

3.  Extension of the method of partial retention of diatomic differential overlap to second row atoms and transition metals.

Authors:  D S Marynick; W N Lipscomb
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

4.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

5.  Hybrid QM/MM study of thio effects in transphosphorylation reactions.

Authors:  Brent A Gregersen; Xabier Lopez; Darrin M York
Journal:  J Am Chem Soc       Date:  2003-06-18       Impact factor: 15.419

  5 in total
  21 in total

1.  Multipole electrostatic potential derived atomic charges in NDDO-methods with spd-basis sets.

Authors:  Anselm H C Horn; Timothy Clark
Journal:  J Mol Model       Date:  2006-08-22       Impact factor: 1.810

2.  QSPR modeling of UV absorption intensities.

Authors:  Alan R Katritzky; Svetoslav H Slavov; Dimitar A Dobchev; Mati Karelson
Journal:  J Comput Aided Mol Des       Date:  2007-06-12       Impact factor: 3.686

3.  AM1* parameters for bromine and iodine.

Authors:  Hakan Kayi; Timothy Clark
Journal:  J Mol Model       Date:  2008-12-05       Impact factor: 1.810

4.  AM1* parameters for vanadium and chromium.

Authors:  Hakan Kayi; Timothy Clark
Journal:  J Mol Model       Date:  2009-03-26       Impact factor: 1.810

5.  The local electron affinity for non-minimal basis sets.

Authors:  Timothy Clark
Journal:  J Mol Model       Date:  2010-01-10       Impact factor: 1.810

6.  AM1* parameters for gold.

Authors:  Hakan Kayi
Journal:  J Mol Model       Date:  2009-11-13       Impact factor: 1.810

7.  AM1 parameters for palladium and silver.

Authors:  Hakan Kayi; Timothy Clark
Journal:  J Mol Model       Date:  2011-01-13       Impact factor: 1.810

8.  Natural bond orbital, nuclear magnetic resonance analysis and hybrid-density functional theory study of σ-aromaticity in Al₂F₆, Al₂Cl₆, Al₂Br₆ and Al₂I₆.

Authors:  Davood Nori-Shargh; Hooriye Yahyaei; Seiedeh Negar Mousavi; Akram Maasoomi; Hakan Kayi
Journal:  J Mol Model       Date:  2013-03-02       Impact factor: 1.810

9.  AM1* parameters for manganese and iron.

Authors:  Hakan Kayi; Timothy Clark
Journal:  J Mol Model       Date:  2009-11-24       Impact factor: 1.810

10.  Molecular dynamics simulations of the detoxification of paraoxon catalyzed by phosphotriesterase.

Authors:  Xin Zhang; Ruibo Wu; Lingchun Song; Yuchun Lin; Menghai Lin; Zexing Cao; Wei Wu; Yirong Mo
Journal:  J Comput Chem       Date:  2009-11-30       Impact factor: 3.376

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.