Literature DB >> 16920700

ApoB mRNA editing is mediated by a coordinated modulation of multiple apoB mRNA editing enzyme components.

Zhigang Chen1, Thomas L Eggerman, Amy P Patterson.   

Abstract

Apolipoprotein (apo)B mRNA editing is accomplished by a large multiprotein complex. How these proteins interact to achieve the precise single-nucleotide change induced by this complex remains unclear. We investigated the relationship between altered apoB mRNA editing and changes in editing enzyme components to evaluate their roles in editing regulation. In the mouse fetal small intestine, we found that the dramatic developmental upregulation of apoB mRNA editing from approximately 3% to 88% begins with decreased levels of inhibitory CUG binding protein 2 (CUGBP2) expression followed by increased levels of apoB mRNA editing enzyme (apobec)-1 and apobec-1 complementation factor (ACF) (4- and 8-fold) and then by decreased levels of the inhibitory components glycine-arginine-tyrosine-rich RNA binding protein (GRY-RBP) and heterogeneous nuclear ribonucleoprotein (hnRNP)-C1 (75% and 56%). In contrast, the expression of KH-type splicing regulatory protein (KSRP), apobec-1 binding protein (ABBP)1, ABBP2, and Bcl-2-associated athanogene 4 (BAG4) were unaltered. In the human intestinal cell line Caco-2, the increase of apoB mRNA editing from approximately 1.7% to approximately 23% was associated with 6- and 3.2-fold increases of apobec-1 and CUGBP2, respectively. In the mouse large intestine, the editing was 48% and had a 2.7-fold relatively greater CUGBP2 level. Caco-2 and the large intestine thus have increased instead of decreased CUGBP2 and a lower level of editing, suggesting that inhibitory CUGBP2 may play a critical role in the magnitude of editing regulation. Short interfering RNA-mediated gene-specific knockdown of CUGBP2, GRY-RBP, and hnRNP-C1 resulted in increased editing in Caco-2 cells, consistent with their known inhibitory function. These data suggest that a coordinated expression of editing components determines the magnitude and specificity of apoB mRNA editing.

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Year:  2006        PMID: 16920700     DOI: 10.1152/ajpgi.00118.2006

Source DB:  PubMed          Journal:  Am J Physiol Gastrointest Liver Physiol        ISSN: 0193-1857            Impact factor:   4.052


  10 in total

1.  Hypermutation induced by APOBEC-1 overexpression can be eliminated.

Authors:  Zhigang Chen; Thomas L Eggerman; Alexander V Bocharov; Irina N Baranova; Tatyana G Vishnyakova; Gyorgy Csako; Amy P Patterson
Journal:  RNA       Date:  2010-03-26       Impact factor: 4.942

2.  C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47.

Authors:  Nicolas Fossat; Karin Tourle; Tania Radziewic; Kristen Barratt; Doreen Liebhold; Joshua B Studdert; Melinda Power; Vanessa Jones; David A F Loebel; Patrick P L Tam
Journal:  EMBO Rep       Date:  2014-06-10       Impact factor: 8.807

3.  Re-editing the paradigm of Cytidine (C) to Uridine (U) RNA editing.

Authors:  Nicolas Fossat; Patrick P L Tam
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 4.  The importance of CELF control: molecular and biological roles of the CUG-BP, Elav-like family of RNA-binding proteins.

Authors:  Twishasri Dasgupta; Andrea N Ladd
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-08-17       Impact factor: 9.957

Review 5.  APOBEC-1-mediated RNA editing.

Authors:  Valerie Blanc; Nicholas O Davidson
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Sep-Oct

6.  Hypermutation of ApoB mRNA by rat APOBEC-1 overexpression mimics APOBEC-3 hypermutation.

Authors:  Zhigang Chen; Thomas L Eggerman; Alexander V Bocharov; Irina N Baranova; Tatyana G Vishnyakova; Roger J Kurlander; Gyorgy Csako; Amy P Patterson
Journal:  J Mol Biol       Date:  2012-02-09       Impact factor: 5.469

7.  Flow-cytometric visualization of C>U mRNA editing reveals the dynamics of the process in live cells.

Authors:  Francesco Severi; Silvestro G Conticello
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 8.  CELF Family Proteins in Cancer: Highlights on the RNA-Binding Protein/Noncoding RNA Regulatory Axis.

Authors:  Maryam Nasiri-Aghdam; Texali C Garcia-Garduño; Luis Felipe Jave-Suárez
Journal:  Int J Mol Sci       Date:  2021-10-14       Impact factor: 5.923

9.  Allele-biased expression of the bovine APOB gene associated with the cholesterol deficiency defect suggests cis-regulatory enhancer effects of the LTR retrotransposon insertion.

Authors:  Doreen Becker; Rosemarie Weikard; Annika Heimes; Frieder Hadlich; Harald M Hammon; Marie M Meyerholz; Wolfram Petzl; Holm Zerbe; Hans-Joachim Schuberth; Martina Hoedemaker; Marion Schmicke; Susanne Engelmann; Christa Kühn
Journal:  Sci Rep       Date:  2022-08-05       Impact factor: 4.996

10.  Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver.

Authors:  Valerie Blanc; Eddie Park; Sabine Schaefer; Melanie Miller; Yiing Lin; Susan Kennedy; Anja M Billing; Hisham Ben Hamidane; Johannes Graumann; Ali Mortazavi; Joseph H Nadeau; Nicholas O Davidson
Journal:  Genome Biol       Date:  2014-06-19       Impact factor: 13.583

  10 in total

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