Literature DB >> 16910688

Creation of a broad-range and highly stereoselective D-amino acid dehydrogenase for the one-step synthesis of D-amino acids.

Kavitha Vedha-Peters1, Manjula Gunawardana, J David Rozzell, Scott J Novick.   

Abstract

Using both rational and random mutagenesis, we have created the first known broad substrate range, nicotinamide cofactor dependent, and highly stereoselective d-amino acid dehydrogenase. This new enzyme is capable of producing d-amino acids via the reductive amination of the corresponding 2-keto acid with ammonia. This biocatalyst was the result of three rounds of mutagenesis and screening performed on the enzyme meso-diaminopimelate d-dehydrogenase. The first round targeted the active site of the wild-type enzyme and produced mutants that were no longer strictly dependent on the native substrate. The second and third rounds produced mutants that had an increased substrate range including straight- and branched-aliphatic amino acids and aromatic amino acids. The very high selectivity toward the d-enantiomer (95 to >99% ee) was shown to be preserved even after the addition of the five mutations found in the three rounds of mutagenesis and screening. This new enzyme could complement and improve upon current methods for d-amino acid synthesis.

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Year:  2006        PMID: 16910688      PMCID: PMC2533268          DOI: 10.1021/ja0603960

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  31 in total

Review 1.  The use of enzymes in the chemical industry in Europe.

Authors:  Andreas Schmid; Frank Hollmann; Jin Byung Park; Bruno Bühler
Journal:  Curr Opin Biotechnol       Date:  2002-08       Impact factor: 9.740

Review 2.  Enzymes in the D-alanine branch of bacterial cell wall peptidoglycan assembly.

Authors:  C T Walsh
Journal:  J Biol Chem       Date:  1989-02-15       Impact factor: 5.157

3.  Nucleotide sequence of the meso-diaminopimelate D-dehydrogenase gene from Corynebacterium glutamicum.

Authors:  S Ishino; T Mizukami; K Yamaguchi; R Katsumata; K Araki
Journal:  Nucleic Acids Res       Date:  1987-05-11       Impact factor: 16.971

4.  Purification and properties of D-amino acid dehydrogenase, an inducible membrane-bound iron-sulfur flavoenzyme from Escherichia coli B.

Authors:  P J Olsiewski; G J Kaczorowski; C Walsh
Journal:  J Biol Chem       Date:  1980-05-25       Impact factor: 5.157

5.  A colorimetric assay to quantify dehydrogenase activity in crude cell lysates.

Authors:  Kimberly M Mayer; Frances H Arnold
Journal:  J Biomol Screen       Date:  2002-04

6.  Mechanism-based inactivation of alanine racemase by 3-halovinylglycines.

Authors:  N A Thornberry; H G Bull; D Taub; K E Wilson; G Giménez-Gallego; A Rosegay; D D Soderman; A A Patchett
Journal:  J Biol Chem       Date:  1991-11-15       Impact factor: 5.157

7.  Meso-alpha,epsilon-diaminopimelate D-dehydrogenase: distribution and the reaction product.

Authors:  H Misono; H Togawa; T Yamamoto; K Soda
Journal:  J Bacteriol       Date:  1979-01       Impact factor: 3.490

8.  New developments in the synthesis of natural and unnatural amino acids.

Authors:  J Kamphuis; E M Meijer; W H Boesten; T Sonke; W J van den Tweel; H E Schoemaker
Journal:  Ann N Y Acad Sci       Date:  1992-11-30       Impact factor: 5.691

9.  Properties of meso-alpha,epsilon-diaminopimelate D-dehydrogenase from Bacillus sphaericus.

Authors:  H Misono; K Soda
Journal:  J Biol Chem       Date:  1980-11-25       Impact factor: 5.157

10.  A functionally split pathway for lysine synthesis in Corynebacterium glutamicium.

Authors:  B Schrumpf; A Schwarzer; J Kalinowski; A Pühler; L Eggeling; H Sahm
Journal:  J Bacteriol       Date:  1991-07       Impact factor: 3.490

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  15 in total

1.  A Newly Determined Member of the meso-Diaminopimelate Dehydrogenase Family with a Broad Substrate Spectrum.

Authors:  Xiuzhen Gao; Zheng Zhang; Ya'nan Zhang; Ying Li; Heng Zhu; Sheng Wang; Cun Li
Journal:  Appl Environ Microbiol       Date:  2017-05-17       Impact factor: 4.792

2.  A novel meso-Diaminopimelate dehydrogenase from Symbiobacterium thermophilum: overexpression, characterization, and potential for D-amino acid synthesis.

Authors:  Xiuzhen Gao; Xi Chen; Weidong Liu; Jinhui Feng; Qiaqing Wu; Ling Hua; Dunming Zhu
Journal:  Appl Environ Microbiol       Date:  2012-09-28       Impact factor: 4.792

3.  Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase.

Authors:  Junji Hayashi; Tomonari Seto; Hironaga Akita; Masahiro Watanabe; Tamotsu Hoshino; Kazunari Yoneda; Toshihisa Ohshima; Haruhiko Sakuraba
Journal:  Appl Environ Microbiol       Date:  2017-05-17       Impact factor: 4.792

4.  Engineering the meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum by site saturation mutagenesis for D-phenylalanine synthesis.

Authors:  Xiuzhen Gao; Fang Huang; Jinhui Feng; Xi Chen; Hailing Zhang; Zhixiang Wang; Qiaqing Wu; Dunming Zhu
Journal:  Appl Environ Microbiol       Date:  2013-05-31       Impact factor: 4.792

Review 5.  Directed enzyme evolution: climbing fitness peaks one amino acid at a time.

Authors:  Cara A Tracewell; Frances H Arnold
Journal:  Curr Opin Chem Biol       Date:  2009-02-25       Impact factor: 8.822

6.  Highly stable meso-diaminopimelate dehydrogenase from an Ureibacillus thermosphaericus strain A1 isolated from a Japanese compost: purification, characterization and sequencing.

Authors:  Hironaga Akita; Yasuhiro Fujino; Katsumi Doi; Toshihisa Ohshima
Journal:  AMB Express       Date:  2011-11-25       Impact factor: 3.298

7.  Highly Atom Economic Synthesis of d-2-Aminobutyric Acid through an In Vitro Tri-enzymatic Catalytic System.

Authors:  Xi Chen; Yunfeng Cui; Xinkuan Cheng; Jinhui Feng; Qiaqing Wu; Dunming Zhu
Journal:  ChemistryOpen       Date:  2017-07-17       Impact factor: 2.911

Review 8.  Advances in Enzymatic Synthesis of D-Amino Acids.

Authors:  Loredano Pollegioni; Elena Rosini; Gianluca Molla
Journal:  Int J Mol Sci       Date:  2020-05-01       Impact factor: 5.923

Review 9.  Artificial Thermostable D-Amino Acid Dehydrogenase: Creation and Application.

Authors:  Hironaga Akita; Junji Hayashi; Haruhiko Sakuraba; Toshihisa Ohshima
Journal:  Front Microbiol       Date:  2018-08-03       Impact factor: 5.640

10.  Biocatalytic synthesis of chiral alcohols and amino acids for development of pharmaceuticals.

Authors:  Ramesh N Patel
Journal:  Biomolecules       Date:  2013-10-02
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