Literature DB >> 16908850

Anisotropic deformation response of single protein molecules.

Hendrik Dietz1, Felix Berkemeier, Morten Bertz, Matthias Rief.   

Abstract

Single-molecule methods have given experimental access to the mechanical properties of single protein molecules. So far, access has been limited to mostly one spatial direction of force application. Here, we report single-molecule experiments that explore the mechanical properties of a folded protein structure in precisely controlled directions by applying force to selected amino acid pairs. We investigated the deformation response of GFP in five selected directions. We found fracture forces widely varying from 100 pN up to 600 pN. We show that straining the GFP structure in one of the five directions induces partial fracture of the protein into a half-folded intermediate structure. From potential widths we estimated directional spring constants of the GFP structure and found values ranging from 1 N/m up to 17 N/m. Our results show that classical continuum mechanics and simple mechanistic models fail to describe the complex mechanics of the GFP protein structure and offer insights into the mechanical design of protein materials.

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Year:  2006        PMID: 16908850      PMCID: PMC1568916          DOI: 10.1073/pnas.0602995103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  The speed limit for protein folding measured by triplet-triplet energy transfer.

Authors:  O Bieri; J Wirz; B Hellrung; M Schutkowski; M Drewello; T Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Unfolding pathways of individual bacteriorhodopsins.

Authors:  F Oesterhelt; D Oesterhelt; M Pfeiffer; A Engel; H E Gaub; D J Müller
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

3.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

4.  Controlled unfolding and refolding of a single sodium-proton antiporter using atomic force microscopy.

Authors:  Alexej Kedrov; Christine Ziegler; Harald Janovjak; Werner Kühlbrandt; Daniel J Müller
Journal:  J Mol Biol       Date:  2004-07-23       Impact factor: 5.469

5.  Biophysical investigations of engineered polyproteins: implications for force data.

Authors:  Ross W S Rounsevell; Annette Steward; Jane Clarke
Journal:  Biophys J       Date:  2004-12-21       Impact factor: 4.033

6.  Temperature softening of a protein in single-molecule experiments.

Authors:  Michael Schlierf; Matthias Rief
Journal:  J Mol Biol       Date:  2005-10-10       Impact factor: 5.469

7.  Bacteriorhodopsin folds into the membrane against an external force.

Authors:  Max Kessler; Kay E Gottschalk; Harald Janovjak; Daniel J Muller; Hermann E Gaub
Journal:  J Mol Biol       Date:  2006-01-06       Impact factor: 5.469

8.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

9.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

10.  Elasticity and unfolding of single molecules of the giant muscle protein titin.

Authors:  L Tskhovrebova; J Trinick; J A Sleep; R M Simmons
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

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  98 in total

1.  Effect of sequence variation on the mechanical response of amyloid fibrils probed by steered molecular dynamics simulation.

Authors:  Hlengisizwe Ndlovu; Alison E Ashcroft; Sheena E Radford; Sarah A Harris
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

2.  The molten globule state is unusually deformable under mechanical force.

Authors:  Phillip J Elms; John D Chodera; Carlos Bustamante; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

3.  Mechanical anisotropy of ankyrin repeats.

Authors:  Whasil Lee; Xiancheng Zeng; Kristina Rotolo; Ming Yang; Christopher J Schofield; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

4.  Hidden multiple bond effects in dynamic force spectroscopy.

Authors:  Sebastian Getfert; Peter Reimann
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

5.  Nonkinetic modeling of the mechanical unfolding of multimodular proteins: theory and experiments.

Authors:  F Benedetti; C Micheletti; G Bussi; S K Sekatskii; G Dietler
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

6.  Dynamics of protein folding and cofactor binding monitored by single-molecule force spectroscopy.

Authors:  Yi Cao; Hongbin Li
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

7.  Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.

Authors:  Chunmei Lv; Cheng Tan; Meng Qin; Dawei Zou; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

8.  Protein crystals: How the weak become strong.

Authors:  Christine Semmrich; Andreas R Bausch
Journal:  Nat Mater       Date:  2010-04       Impact factor: 43.841

9.  Functional modes and residue flexibility control the anisotropic response of guanylate kinase to mechanical stress.

Authors:  Sophie Sacquin-Mora; Olivier Delalande; Marc Baaden
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

10.  Mechanochemistry in Translation.

Authors:  Sarah E Leininger; Karthik Narayan; Carol Deutsch; Edward P O'Brien
Journal:  Biochemistry       Date:  2019-06-11       Impact factor: 3.162

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