Literature DB >> 16907424

Identity of distributions of direct uphill and downhill translocation times for particles traversing membrane channels.

Alexander M Berezhkovskii1, Gerhard Hummer, Sergey M Bezrukov.   

Abstract

We study the distribution of direct translocation times for particles passing through membrane channels connecting two reservoirs. The direct translocation time is a conditional first-passage time defined as the residence time of the particle in the channel while passing to the other side of the membrane directly, i.e., without returning to the reservoir from which it entered. We show that the distributions of direct translocation times are identical for translocation in both directions, independent of any asymmetry in the potential across the channel and, hence, the translocation probabilities.

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Year:  2006        PMID: 16907424     DOI: 10.1103/PhysRevLett.97.020601

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  15 in total

1.  On the applicability of entropy potentials in transport problems.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  Eur Phys J Spec Top       Date:  2014-12       Impact factor: 2.707

2.  Drift and diffusion in periodic potentials: upstream and downstream step times are distributed identically.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii
Journal:  J Chem Phys       Date:  2009-08-07       Impact factor: 3.488

3.  Bridging timescales and length scales: from macroscopic flux to the molecular mechanism of antibiotic diffusion through porins.

Authors:  Eric Hajjar; Kozhinjampara R Mahendran; Amit Kumar; Andrey Bessonov; Mircea Petrescu; Helge Weingart; Paolo Ruggerone; Mathias Winterhalter; Matteo Ceccarelli
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

4.  Exact Solutions for Distributions of First-Passage, Direct-Transit, and Looping Times in Symmetric Cusp Potential Barriers and Wells.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Phys Chem B       Date:  2019-04-23       Impact factor: 2.991

5.  Broad distributions of transition-path times are fingerprints of multidimensionality of the underlying free energy landscapes.

Authors:  Rohit Satija; Alexander M Berezhkovskii; Dmitrii E Makarov
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-21       Impact factor: 11.205

6.  A new insight into diffusional escape from a biased cylindrical trap.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2017-09-14       Impact factor: 3.488

7.  First passage, looping, and direct transition in expanding and narrowing tubes: Effects of the entropy potential.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2017-10-07       Impact factor: 3.488

8.  Communication: Coordinate-dependent diffusivity from single molecule trajectories.

Authors:  Alexander M Berezhkovskii; Dmitrii E Makarov
Journal:  J Chem Phys       Date:  2017-11-28       Impact factor: 3.488

9.  Facilitated translocation of polypeptides through a single nanopore.

Authors:  Robert Bikwemu; Aaron J Wolfe; Xiangjun Xing; Liviu Movileanu
Journal:  J Phys Condens Matter       Date:  2010-10-29       Impact factor: 2.333

10.  Peculiarities of the Mean Transition Path Time Dependence on the Barrier Height in Entropy Potentials.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Phys Chem B       Date:  2020-03-16       Impact factor: 2.991

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