Literature DB >> 16907139

Characterization of the tunneling conductance across DNA bases.

Radomir Zikic1, Predrag S Krstić, X-G Zhang, Miguel Fuentes-Cabrera, Jack Wells, Xiongce Zhao.   

Abstract

Characterization of the electrical properties of the DNA bases (adenine, cytosine, guanine, and thymine), in addition to building the basic knowledge on these fundamental constituents of a DNA, is a crucial step in developing a DNA sequencing technology. We present a first-principles study of the current-voltage characteristics of nucleotidelike molecules of the DNA bases, placed in a 1.5 nm gap formed between gold nanoelectrodes. The quantum transport calculations in the tunneling regime are shown to vary strongly with the electrode-molecule geometry and the choice of the density-functional theory exchange-correlation functionals. Analysis of the results in the zero-bias limit indicates that distinguishable current-voltage characteristics of different DNA bases are dominated by the geometrical conformations of the bases and nanoelectrodes.

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Year:  2006        PMID: 16907139     DOI: 10.1103/PhysRevE.74.011919

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  14 in total

1.  DNA sequencing: Read with quantum mechanics.

Authors:  Thomas Thundat
Journal:  Nat Nanotechnol       Date:  2010-04       Impact factor: 39.213

2.  Nucleotide capacitance calculation for DNA sequencing.

Authors:  Jun-Qiang Lu; X-G Zhang
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

3.  Electrochemical tunnelling sensors and their potential applications.

Authors:  T Albrecht
Journal:  Nat Commun       Date:  2012-05-08       Impact factor: 14.919

4.  Nanopore with Transverse Nanoelectrodes for Electrical Characterization and Sequencing of DNA.

Authors:  Brian C Gierhart; David G Howitt; Shiahn J Chen; Zhineng Zhu; David E Kotecki; Rosemary L Smith; Scott D Collins
Journal:  Sens Actuators B Chem       Date:  2008-06-16       Impact factor: 7.460

5.  A molecular dynamics simulation study on trapping ions in a nanoscale Paul trap.

Authors:  Xiongce Zhao; Predrag S Krstic
Journal:  Nanotechnology       Date:  2008-04-08       Impact factor: 3.874

6.  Controlled translocation of individual DNA molecules through protein nanopores with engineered molecular brakes.

Authors:  Marcela Rincon-Restrepo; Ellina Mikhailova; Hagan Bayley; Giovanni Maglia
Journal:  Nano Lett       Date:  2011-01-11       Impact factor: 11.189

7.  Electronic signatures of all four DNA nucleosides in a tunneling gap.

Authors:  Shuai Chang; Shuo Huang; Jin He; Feng Liang; Peiming Zhang; Shengqing Li; Xiang Chen; Otto Sankey; Stuart Lindsay
Journal:  Nano Lett       Date:  2010-03-10       Impact factor: 11.189

8.  A long DNA segment in a linear nanoscale Paul trap.

Authors:  Sony Joseph; Weihua Guan; Mark A Reed; Predrag S Krstic
Journal:  Nanotechnology       Date:  2009-11-30       Impact factor: 3.874

9.  Insights into electron tunneling across hydrogen-bonded base-pairs in complete molecular circuits for single-stranded DNA sequencing.

Authors:  Myeong H Lee; Otto F Sankey
Journal:  J Phys Condens Matter       Date:  2009-01-21       Impact factor: 2.333

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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