Literature DB >> 16901225

National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge.

Daniel L Rubin1, Suzanna E Lewis, Chris J Mungall, Sima Misra, Monte Westerfield, Michael Ashburner, Ida Sim, Christopher G Chute, Harold Solbrig, Margaret-Anne Storey, Barry Smith, John Day-Richter, Natalya F Noy, Mark A Musen.   

Abstract

The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) to create new software tools so that scientists can use ontologies to annotate and analyze biomedical data, (3) to provide a national resource for the ongoing evaluation, integration, and evolution of biomedical ontologies and associated tools and theories in the context of driving biomedical projects (DBPs), and (4) to disseminate the tools and resources of the Center and to identify, evaluate, and communicate best practices of ontology development to the biomedical community. Through the research activities within the Center, collaborations with the DBPs, and interactions with the biomedical community, our goal is to help scientists to work more effectively in the e-science paradigm, enhancing experiment design, experiment execution, data analysis, information synthesis, hypothesis generation and testing, and understand human disease.

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Year:  2006        PMID: 16901225     DOI: 10.1089/omi.2006.10.185

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  44 in total

1.  Using ontology-based annotation to profile disease research.

Authors:  Yi Liu; Adrien Coulet; Paea LePendu; Nigam H Shah
Journal:  J Am Med Inform Assoc       Date:  2012-04-11       Impact factor: 4.497

Review 2.  Development of FuGO: an ontology for functional genomics investigations.

Authors:  Patricia L Whetzel; Ryan R Brinkman; Helen C Causton; Liju Fan; Dawn Field; Jennifer Fostel; Gilberto Fragoso; Tanya Gray; Mervi Heiskanen; Tina Hernandez-Boussard; Norman Morrison; Helen Parkinson; Philippe Rocca-Serra; Susanna-Assunta Sansone; Daniel Schober; Barry Smith; Robert Stevens; Christian J Stoeckert; Chris Taylor; Joe White; Andrew Wood
Journal:  OMICS       Date:  2006

3.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

Review 4.  Accessing and integrating data and knowledge for biomedical research.

Authors:  A Burgun; O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

5.  Comparison of ontology-based semantic-similarity measures.

Authors:  Wei-Nchih Lee; Nigam Shah; Karanjot Sundlass; Mark Musen
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

6.  Interpretation errors related to the GO annotation file format.

Authors:  Dilvan A Moreira; Nigam H Shah; Mark A Musen
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

7.  Development and evaluation of an ontology for guiding appropriate antibiotic prescribing.

Authors:  Tiffani J Bright; E Yoko Furuya; Gilad J Kuperman; James J Cimino; Suzanne Bakken
Journal:  J Biomed Inform       Date:  2011-10-11       Impact factor: 6.317

8.  Translational bioinformatics: coming of age.

Authors:  Atul J Butte
Journal:  J Am Med Inform Assoc       Date:  2008-08-28       Impact factor: 4.497

9.  Word add-in for ontology recognition: semantic enrichment of scientific literature.

Authors:  J Lynn Fink; Pablo Fernicola; Rahul Chandran; Savas Parastatidis; Alex Wade; Oscar Naim; Gregory B Quinn; Philip E Bourne
Journal:  BMC Bioinformatics       Date:  2010-02-24       Impact factor: 3.169

10.  Celsius: a community resource for Affymetrix microarray data.

Authors:  Allen Day; Marc R J Carlson; Jun Dong; Brian D O'Connor; Stanley F Nelson
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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