Literature DB >> 16891126

Analyzing fMRI experiments with structural adaptive smoothing procedures.

Karsten Tabelow1, Jörg Polzehl, Henning U Voss, Vladimir Spokoiny.   

Abstract

Data from functional magnetic resonance imaging (fMRI) consist of time series of brain images that are characterized by a low signal-to-noise ratio. In order to reduce noise and to improve signal detection, the fMRI data are spatially smoothed. However, the common application of a Gaussian filter does this at the cost of loss of information on spatial extent and shape of the activation area. We suggest to use the propagation-separation procedures introduced by Polzehl, J., Spokoiny, V. (2006). Propagation-separation approach for local likelihood estimation. Probab. Theory Relat. Fields, in print. instead. We show that this significantly improves the information on the spatial extent and shape of the activation region with similar results for the noise reduction. To complete the statistical analysis, signal detection is based on thresholds defined by random field theory. Effects of adaptive and non-adaptive smoothing are illustrated by artificial examples and an analysis of experimental data.

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Substances:

Year:  2006        PMID: 16891126     DOI: 10.1016/j.neuroimage.2006.06.029

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  25 in total

1.  TwinMARM: two-stage multiscale adaptive regression methods for twin neuroimaging data.

Authors:  Yimei Li; John H Gilmore; Jiaping Wang; Martin Styner; Weili Lin; Hongtu Zhu
Journal:  IEEE Trans Med Imaging       Date:  2012-01-24       Impact factor: 10.048

2.  Adaptive smoothing as inference strategy: more specificity for unequally sized or neighbouring regions.

Authors:  Marijke Welvaert; Karsten Tabelow; Ruth Seurinck; Yves Rosseel
Journal:  Neuroinformatics       Date:  2013-10

3.  SR-HARDI: Spatially Regularizing High Angular Resolution Diffusion Imaging.

Authors:  Shangbang Rao; Joseph G Ibrahim; Jian Cheng; Pew-Thian Yap; Hongtu Zhu
Journal:  J Comput Graph Stat       Date:  2015-11-11       Impact factor: 2.302

4.  Adaptive smoothing based on Gaussian processes regression increases the sensitivity and specificity of fMRI data.

Authors:  Francesca Strappini; Elad Gilboa; Sabrina Pitzalis; Kendrick Kay; Mark McAvoy; Arye Nehorai; Abraham Z Snyder
Journal:  Hum Brain Mapp       Date:  2016-12-10       Impact factor: 5.038

5.  Multiscale Adaptive Regression Models for Neuroimaging Data.

Authors:  Yimei Li; Hongtu Zhu; Dinggang Shen; Weili Lin; John H Gilmore; Joseph G Ibrahim
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2011-09       Impact factor: 4.488

6.  Modeling inter-subject variability in FMRI activation location: a Bayesian hierarchical spatial model.

Authors:  Lei Xu; Timothy D Johnson; Thomas E Nichols; Derek E Nee
Journal:  Biometrics       Date:  2009-12       Impact factor: 2.571

7.  Optimizing the performance of local canonical correlation analysis in fMRI using spatial constraints.

Authors:  Dietmar Cordes; Mingwu Jin; Tim Curran; Rajesh Nandy
Journal:  Hum Brain Mapp       Date:  2011-08-30       Impact factor: 5.038

8.  MARM: multiscale adaptive regression models for neuroimaging data.

Authors:  Hongtu Zhu; Yimei Li; Joseph G Ibrahim; Weili Lin; Dinggang Shen
Journal:  Inf Process Med Imaging       Date:  2009

9.  Multiscale adaptive generalized estimating equations for longitudinal neuroimaging data.

Authors:  Yimei Li; John H Gilmore; Dinggang Shen; Martin Styner; Weili Lin; Hongtu Zhu
Journal:  Neuroimage       Date:  2013-01-26       Impact factor: 6.556

10.  Functional MRI of the zebra finch brain during song stimulation suggests a lateralized response topography.

Authors:  Henning U Voss; Karsten Tabelow; Jörg Polzehl; Ofer Tchernichovski; Kristen K Maul; Delanthi Salgado-Commissariat; Douglas Ballon; Santosh A Helekar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-11       Impact factor: 11.205

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