Literature DB >> 16881656

A simple gamma-backbone modification preorganizes peptide nucleic acid into a helical structure.

Anca Dragulescu-Andrasi1, Srinivas Rapireddy, Brian M Frezza, Chakicherla Gayathri, Roberto R Gil, Danith H Ly.   

Abstract

Peptide nucleic acid (PNA) is a synthetic analogue of DNA and RNA, developed more than a decade ago in which the naturally occurring sugar phosphate backbone has been replaced by the N-(2-aminoethyl) glycine units. Unlike DNA or RNA in the unhybridized state (single strand) which can adopt a helical structure through base-stacking, although highly flexible, PNA does not have a well-defined conformational folding in solution. Herein, we show that a simple backbone modification at the gamma-position of the N-(2-aminoethyl) glycine unit can transform a randomly folded PNA into a helical structure. Spectroscopic studies showed that helical induction occurs in the C- to N-terminal direction and is sterically driven. This finding has important implication not only on the future design of nucleic acid mimics but also on the design of novel materials, where molecular organization and efficient electronic coupling are desired.

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Year:  2006        PMID: 16881656     DOI: 10.1021/ja0625576

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  64 in total

Review 1.  Targeting DNA G-quadruplex structures with peptide nucleic acids.

Authors:  Igor G Panyutin; Mykola I Onyshchenko; Ethan A Englund; Daniel H Appella; Ronald D Neumann
Journal:  Curr Pharm Des       Date:  2012       Impact factor: 3.116

2.  Effect of chirality in gamma-PNA: PNA interaction, another piece in the picture.

Authors:  Alex Manicardi; Roberto Corradini
Journal:  Artif DNA PNA XNA       Date:  2014-12-15

Review 3.  Insights on chiral, backbone modified peptide nucleic acids: Properties and biological activity.

Authors:  Maria Moccia; Mauro F A Adamo; Michele Saviano
Journal:  Artif DNA PNA XNA       Date:  2016-01-11

4.  DNA-templated polymerization of side-chain-functionalized peptide nucleic acid aldehydes.

Authors:  Ralph E Kleiner; Yevgeny Brudno; Michael E Birnbaum; David R Liu
Journal:  J Am Chem Soc       Date:  2008-03-15       Impact factor: 15.419

5.  Tumor-Targeted, Cytoplasmic Delivery of Large, Polar Molecules Using a pH-Low Insertion Peptide.

Authors:  Alexander A Svoronos; Raman Bahal; Mohan C Pereira; Francisco N Barrera; John C Deacon; Marcus Bosenberg; Daniel DiMaio; Peter M Glazer; Donald M Engelman
Journal:  Mol Pharm       Date:  2020-01-13       Impact factor: 4.939

6.  Cooperative hybridization of γPNA miniprobes to a repeating sequence motif and application to telomere analysis.

Authors:  Ha H Pham; Connor T Murphy; Gopalsamy Sureshkumar; Danith H Ly; Patricia L Opresko; Bruce A Armitage
Journal:  Org Biomol Chem       Date:  2014-10-07       Impact factor: 3.876

Review 7.  Antimicrobial AApeptides.

Authors:  Peng Sang; Yan Shi; Peng Teng; Annie Cao; Hai Xu; Qi Li; Jianfeng Cai
Journal:  Curr Top Med Chem       Date:  2017       Impact factor: 3.295

8.  Ku80-Targeted pH-Sensitive Peptide-PNA Conjugates Are Tumor Selective and Sensitize Cancer Cells to Ionizing Radiation.

Authors:  Alanna R Kaplan; Ha Pham; Yanfeng Liu; Stanley Oyaghire; Raman Bahal; Donald M Engelman; Peter M Glazer
Journal:  Mol Cancer Res       Date:  2020-02-25       Impact factor: 5.852

Review 9.  γ-AApeptides as a New Strategy for Therapeutic Development.

Authors:  Alekhya Nimmagadda; Yan Shi; Jianfeng Cai
Journal:  Curr Med Chem       Date:  2019       Impact factor: 4.530

10.  Loop and backbone modifications of peptide nucleic acid improve g-quadruplex binding selectivity.

Authors:  Sabrina Lusvarghi; Connor T Murphy; Subhadeep Roy; Farial A Tanious; Iulia Sacui; W David Wilson; Danith H Ly; Bruce A Armitage
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

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