Literature DB >> 16880558

Purification, crystallization and preliminary X-ray crystallographic analysis of the archaeal phosphoglycerate mutase PH0037 from Pyrococcus horikoshii OT3.

Neratur K Lokanath1, Naoki Kunishima.   

Abstract

Phosphoglycerate mutases catalyze the interconversion of 2-phosphoglycerate and 3-phosphoglycerate in glycolysis and gluconeogenesis pathways. The archaeal phosphoglycerate mutase PH0037 from Pyrococcus horikoshii OT3 has been overexpressed in Escherichia coli and purified. Crystals were obtained using the oil-microbatch method at 291 K. A native data set extending to a resolution of 2.2 angstroms has been collected and processed in space group R32. Assuming the presence of a dimer in the asymmetric unit, the V(M) value is calculated to be 3.0 angstroms3 Da(-1), consistent with the dynamic light-scattering experiment result, which shows a dimeric state of the protein in solution. Molecular-replacement trials using the crystal structure of Bacilllus stearothermophilus phosphoglycerate mutase as a search model did not provide a satisfactory solution, indicating substantially different structures of these two phophoglycerate mutases.

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Year:  2006        PMID: 16880558      PMCID: PMC2242930          DOI: 10.1107/S1744309106026121

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases.

Authors:  M Y Galperin; A Bairoch; E V Koonin
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

2.  A divergent archaeal member of the alkaline phosphatase binuclear metalloenzyme superfamily has phosphoglycerate mutase activity.

Authors:  David E Graham; Huimin Xu; Robert H White
Journal:  FEBS Lett       Date:  2002-04-24       Impact factor: 4.124

3.  Molecular characterization of phosphoglycerate mutase in archaea.

Authors:  John van der Oost; Martijn A Huynen; Corné H Verhees
Journal:  FEMS Microbiol Lett       Date:  2002-06-18       Impact factor: 2.742

4.  The 1.70 angstroms X-ray crystal structure of Mycobacterium tuberculosis phosphoglycerate mutase.

Authors:  Peter Müller; Michael R Sawaya; Inna Pashkov; Sum Chan; Chau Nguyen; Yim Wu; L Jeanne Perry; David Eisenberg
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-02-24

5.  Structure and mechanism of action of a novel phosphoglycerate mutase from Bacillus stearothermophilus.

Authors:  M J Jedrzejas; M Chander; P Setlow; G Krishnasamy
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

6.  Structural genomics projects in Japan.

Authors:  S Yokoyama; H Hirota; T Kigawa; T Yabuki; M Shirouzu; T Terada; Y Ito; Y Matsuo; Y Kuroda; Y Nishimura; Y Kyogoku; K Miki; R Masui; S Kuramitsu
Journal:  Nat Struct Biol       Date:  2000-11

7.  Crystal structure of human B-type phosphoglycerate mutase bound with citrate.

Authors:  Yanli Wang; Zhiyi Wei; Lin Liu; Zhongjun Cheng; Yajing Lin; Fengyuan Ji; Weimin Gong
Journal:  Biochem Biophys Res Commun       Date:  2005-06-17       Impact factor: 3.575

8.  High resolution structure of the phosphohistidine-activated form of Escherichia coli cofactor-dependent phosphoglycerate mutase.

Authors:  C S Bond; M F White; W N Hunter
Journal:  J Biol Chem       Date:  2000-10-18       Impact factor: 5.157

9.  Phosphoprotein with phosphoglycerate mutase activity from the archaeon Sulfolobus solfataricus.

Authors:  M Ben Potters; Barbara T Solow; Kenneth M Bischoff; David E Graham; Brian H Lower; Richard Helm; Peter J Kennelly
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

10.  The enzymatic activity of phosphoglycerate mutase from gram-positive endospore-forming bacteria requires Mn2+ and is pH sensitive.

Authors:  M Chander; B Setlow; P Setlow
Journal:  Can J Microbiol       Date:  1998-08       Impact factor: 2.419

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  1 in total

Review 1.  Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.

Authors:  Christopher Bräsen; Dominik Esser; Bernadette Rauch; Bettina Siebers
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

  1 in total

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