Literature DB >> 16880543

Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination.

J Rajan Prabu1, S Thamotharan, Jasbeer Singh Khanduja, Emily Zabala Alipio, Chang Yub Kim, Geoffrey S Waldo, Thomas C Terwilliger, Brent Segelke, Tim Lekin, Dominique Toppani, Li Wei Hung, Minmin Yu, Evan Bursey, K Muniyappa, Nagasuma R Chandra, M Vijayan.   

Abstract

The process of recombinational repair is crucial for maintaining genomic integrity and generating biological diversity. In association with RuvB and RuvC, RuvA plays a central role in processing and resolving Holliday junctions, which are a critical intermediate in homologous recombination. Here, the cloning, purification and structure determination of the RuvA protein from Mycobacterium tuberculosis (MtRuvA) are reported. Analysis of the structure and comparison with other known RuvA proteins reveal an octameric state with conserved subunit-subunit interaction surfaces, indicating the requirement of octamer formation for biological activity. A detailed analysis of plasticity in the RuvA molecules has led to insights into the invariant and variable regions, thus providing a framework for understanding regional flexibility in various aspects of RuvA function.

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Year:  2006        PMID: 16880543      PMCID: PMC2242936          DOI: 10.1107/S1744309106024791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  Crystal structures of Mycobacterium smegmatis RecA and its nucleotide complexes.

Authors:  S Datta; R Krishna; N Ganesh; Nagasuma R Chandra; K Muniyappa; M Vijayan
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

2.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 4.  The RuvABC proteins and Holliday junction processing in Escherichia coli.

Authors:  S C West
Journal:  J Bacteriol       Date:  1996-03       Impact factor: 3.490

5.  Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction.

Authors:  J B Rafferty; S E Sedelnikova; D Hargreaves; P J Artymiuk; P J Baker; G J Sharples; A A Mahdi; R G Lloyd; D W Rice
Journal:  Science       Date:  1996-10-18       Impact factor: 47.728

Review 6.  Recombination in mycobacteria.

Authors:  J McFadden
Journal:  Mol Microbiol       Date:  1996-07       Impact factor: 3.501

7.  Functional analyses of the domain structure in the Holliday junction binding protein RuvA.

Authors:  T Nishino; M Ariyoshi; H Iwasaki; H Shinagawa; K Morikawa
Journal:  Structure       Date:  1998-01-15       Impact factor: 5.006

8.  Structure of Mycobacterium smegmatis single-stranded DNA-binding protein and a comparative study involving homologus SSBs: biological implications of structural plasticity and variability in quaternary association.

Authors:  K Saikrishnan; G P Manjunath; Pawan Singh; J Jeyakanthan; Z Dauter; K Sekar; K Muniyappa; M Vijayan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

9.  Protein production by auto-induction in high density shaking cultures.

Authors:  F William Studier
Journal:  Protein Expr Purif       Date:  2005-05       Impact factor: 1.650

10.  X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules.

Authors:  Siddhartha Roy; Surbhi Gupta; Satyabrata Das; K Sekar; Dipankar Chatterji; M Vijayan
Journal:  J Mol Biol       Date:  2004-06-18       Impact factor: 5.469

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  4 in total

1.  Pathways for Holliday junction processing during homologous recombination in Saccharomyces cerevisiae.

Authors:  Thomas M Ashton; Hocine W Mankouri; Anna Heidenblut; Peter J McHugh; Ian D Hickson
Journal:  Mol Cell Biol       Date:  2011-02-22       Impact factor: 4.272

2.  Structures of new crystal forms of Mycobacterium tuberculosis peptidyl-tRNA hydrolase and functionally important plasticity of the molecule.

Authors:  M Selvaraj; Rais Ahmad; Umesh Varshney; M Vijayan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-01-21

3.  Crystal structures of RMI1 and RMI2, two OB-fold regulatory subunits of the BLM complex.

Authors:  Feng Wang; Yuting Yang; Thiyam Ramsing Singh; Valeria Busygina; Rong Guo; Ke Wan; Weidong Wang; Patrick Sung; Amom Ruhikanta Meetei; Ming Lei
Journal:  Structure       Date:  2010-09-08       Impact factor: 5.006

4.  Signs of neutralization in a redundant gene involved in homologous recombination in Wolbachia endosymbionts.

Authors:  Myriam Badawi; Isabelle Giraud; Fabrice Vavre; Pierre Grève; Richard Cordaux
Journal:  Genome Biol Evol       Date:  2014-09-17       Impact factor: 3.416

  4 in total

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