Literature DB >> 22297982

Structures of new crystal forms of Mycobacterium tuberculosis peptidyl-tRNA hydrolase and functionally important plasticity of the molecule.

M Selvaraj1, Rais Ahmad, Umesh Varshney, M Vijayan.   

Abstract

The X-ray structures of new crystal forms of peptidyl-tRNA hydrolase from M. tuberculosis reported here and the results of previous X-ray studies of the enzyme from different sources provide a picture of the functionally relevant plasticity of the protein molecule. The new X-ray results confirm the connection deduced previously between the closure of the lid at the peptide-binding site and the opening of the gate that separates the peptide-binding and tRNA-binding sites. The plasticity of the molecule indicated by X-ray structures is in general agreement with that deduced from the available solution NMR results. The correlation between the lid and the gate movements is not, however, observed in the NMR structure.

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Year:  2012        PMID: 22297982      PMCID: PMC3274386          DOI: 10.1107/S1744309111052341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  32 in total

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Review 2.  Peptidyl-tRNA hydrolase and its critical role in protein biosynthesis.

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Journal:  Microbiology       Date:  2006-08       Impact factor: 2.777

3.  Structural basis of the Tanford transition of bovine beta-lactoglobulin.

Authors:  B Y Qin; M C Bewley; L K Creamer; H M Baker; E N Baker; G B Jameson
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4.  Enzymatic hydrolysis of N-substituted aminoacyl-tRNA.

Authors:  F Cuzin; N Kretchmer; R E Greenberg; R Hurwitz; F Chapeville
Journal:  Proc Natl Acad Sci U S A       Date:  1967-11       Impact factor: 11.205

5.  Structural analysis of the group II intron splicing factor CRS2 yields insights into its protein and RNA interaction surfaces.

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Journal:  J Mol Biol       Date:  2005-01-07       Impact factor: 5.469

6.  Structure of Francisella tularensis peptidyl-tRNA hydrolase.

Authors:  Teresa E Clarke; Vladimir Romanov; Robert Lam; Scott A Gothe; Srinivasa R Peddi; Ekaterina B Razumova; Richard S A Lipman; Arthur A Branstrom; Nickolay Y Chirgadze
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-03-26

7.  Analysis of the open and closed conformations of the GTP-binding protein YsxC from Bacillus subtilis.

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8.  Water-mediated variability in the structure of relaxed-state haemoglobin.

Authors:  Prem Singh Kaushal; R Sankaranarayanan; M Vijayan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-05-17

9.  Role of N and C-terminal tails in DNA binding and assembly in Dps: structural studies of Mycobacterium smegmatis Dps deletion mutants.

Authors:  Siddhartha Roy; Ramachandran Saraswathi; Surbhi Gupta; K Sekar; Dipankar Chatterji; M Vijayan
Journal:  J Mol Biol       Date:  2007-05-10       Impact factor: 5.469

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
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  2 in total

1.  Crowding, molecular volume and plasticity: an assessment involving crystallography, NMR and simulations.

Authors:  M Selvaraj; Rais Ahmad; Umesh Varshney; M Vijayan
Journal:  J Biosci       Date:  2012-12       Impact factor: 1.826

2.  A tRNA-Acetylating Toxin and Detoxifying Enzyme in Mycobacterium tuberculosis.

Authors:  Francesca G Tomasi; Alexander M J Hall; Jessica T P Schweber; Charles L Dulberger; Kerry McGowen; Qingyun Liu; Sarah M Fortune; Sophie Helaine; Eric J Rubin
Journal:  Microbiol Spectr       Date:  2022-05-31
  2 in total

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