Literature DB >> 16877519

Heme coordination states of unfolded ferrous cytochrome C.

Enrica Droghetti1, Silke Oellerich, Peter Hildebrandt, Giulietta Smulevich.   

Abstract

The structural changes of ferrous Cyt-c that are induced by binding to SDS micelles, phospholipid vesicles, DeTAB, and GuHCl as well as by high temperatures and changes in the pH have been studied by RR and UV-Vis absorption spectroscopies. Four species have been identified in which the native methionine-80 ligand is removed from the heme iron. This coordination site is either occupied by a histidine (His-33 or His-26) to form a 6cLS configuration, which is the prevailing species in GuHCl at pH 7.0 and ambient temperature, or remains vacant to yield a 5cHS configuration. The three identified 5cHS species differ with respect to the hydrogen-bond interactions of the proximal histidine ligand (His-18) and include a nonhydrogen-bonded, a hydrogen-bonded, and a deprotonated imidazole ring. These structural motifs have been found irrespective of the unfolding conditions used. An unambiguous spectroscopic distinction of these 5cHS species is possible on the basis of the Fe-N(imidazole) stretching vibrations, the RR bands in the region between 1300 and 1650 cm(-1), and the electronic transitions in the Soret- and Q-band regions. In acid and neutral solutions, the species with a hydrogen-bonded and a nonhydrogen-bonded His-18 prevail, whereas in alkaline solutions a configuration with a deprotonated His-18 ligand is also observed. Upon lowering the pH or increasing the temperature in GuHCl solutions, the structure on the proximal side of the heme is perturbed, resulting in a loss of the hydrogen-bond interactions of the His-18 ligand. Conversely, the hydrogen-bonded His-18 of ferrous Cyt-c is stabilized by electrostatic interactions which increase in strength from phospholipid vesicles to SDS micelles. The results here suggest that unfolding of Cyt-c is initiated by the rupture of the Fe-Met-80 bond and structural reorganizations on the distal side of the heme pocket, whereas the proximal part is only affected in a later stage of the denaturation process.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16877519      PMCID: PMC1578467          DOI: 10.1529/biophysj.105.079749

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Spectrum of horse-heart cytochrome c.

Authors:  E MARGOLIASH; N FROHWIRT
Journal:  Biochem J       Date:  1959-03       Impact factor: 3.857

2.  Determination of the pK for the acid-induced denaturation of ferrocytochrome c.

Authors:  Rastislav Varhac; Marián Antalík
Journal:  Biochemistry       Date:  2004-03-30       Impact factor: 3.162

Review 3.  Fifteen years of Raman spectroscopy of engineered heme containing peroxidases: what have we learned?

Authors:  Giulietta Smulevich; Alessandro Feis; Barry D Howes
Journal:  Acc Chem Res       Date:  2005-05       Impact factor: 22.384

Review 4.  Chemical electric field effects in biological macromolecules.

Authors:  E Neumann
Journal:  Prog Biophys Mol Biol       Date:  1986       Impact factor: 3.667

5.  Hemepeptide models for hemoproteins: the behavior of N-acetylmicroperoxidase-11 in aqueous solution.

Authors:  H M Marques; C B Perry
Journal:  J Inorg Biochem       Date:  1999-07-15       Impact factor: 4.155

6.  Photodissociation of heme distal methionine in ferrous cytochrome C revealed by subpicosecond time-resolved resonance Raman spectroscopy.

Authors:  Simona Cianetti; Michel Négrerie; Marten H Vos; Jean-Louis Martin; Sergei G Kruglik
Journal:  J Am Chem Soc       Date:  2004-11-03       Impact factor: 15.419

7.  A change in the heme stereochemistry of cytochrome c upon addition of sodium dodecyl sulfate: electron paramagnetic resonance and electronic absorption spectral study.

Authors:  T Yoshimura
Journal:  Arch Biochem Biophys       Date:  1988-08-01       Impact factor: 4.013

8.  Hydrogen bonding dynamics during protein folding of reduced cytochrome c: temperature and denaturant concentration dependence.

Authors:  Shinpei Nishida; Tomokazu Nada; Masahide Terazima
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

9.  The coordination of imidazole and substituted pyridines by the hemeoctapeptide N-acetyl-ferromicroperoxidase-8 (FeIINAcMP8).

Authors:  Preeti R Vashi; Helder M Marques
Journal:  J Inorg Biochem       Date:  2004-09       Impact factor: 4.155

10.  A model for the misfolded bis-His intermediate of cytochrome c: the 1-56 N-fragment.

Authors:  Elisa Santoni; Silvia Scatragli; Federica Sinibaldi; Laura Fiorucci; Roberto Santucci; Giulietta Smulevich
Journal:  J Inorg Biochem       Date:  2004-06       Impact factor: 4.155

View more
  13 in total

1.  Engineered holocytochrome c synthases that biosynthesize new cytochromes c.

Authors:  Deanna L Mendez; Shalon E Babbitt; Jeremy D King; John D'Alessandro; Michael B Watson; Robert E Blankenship; Liviu M Mirica; Robert G Kranz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-14       Impact factor: 11.205

2.  The interactions of the ruthenium(II)-cymene complexes with lysozyme and cytochrome c.

Authors:  Dragana Stanic-Vucinic; Stefan Nikolic; Katarina Vlajic; Mirjana Radomirovic; Jelena Mihailovic; Tanja Cirkovic Velickovic; Sanja Grguric-Sipka
Journal:  J Biol Inorg Chem       Date:  2020-02-04       Impact factor: 3.358

Review 3.  Relating the multi-functionality of cytochrome c to membrane binding and structural conversion.

Authors:  Reinhard Schweitzer-Stenner
Journal:  Biophys Rev       Date:  2018-03-24

4.  Structural re-arrangement and peroxidase activation of cytochrome c by anionic analogues of vitamin E, tocopherol succinate and tocopherol phosphate.

Authors:  Naveena Yanamala; Alexander A Kapralov; Mirjana Djukic; Jim Peterson; Gaowei Mao; Judith Klein-Seetharaman; Detcho A Stoyanovsky; Jan Stursa; Jiri Neuzil; Valerian E Kagan
Journal:  J Biol Chem       Date:  2014-10-02       Impact factor: 5.157

5.  Catalytic Reactions and Energy Conservation in the Cytochrome bc1 and b6f Complexes of Energy-Transducing Membranes.

Authors:  Marcin Sarewicz; Sebastian Pintscher; Rafał Pietras; Arkadiusz Borek; Łukasz Bujnowicz; Guy Hanke; William A Cramer; Giovanni Finazzi; Artur Osyczka
Journal:  Chem Rev       Date:  2021-01-19       Impact factor: 60.622

Review 6.  Mitochondrial damage & lipid signaling in traumatic brain injury.

Authors:  Andrew M Lamade; Tamil S Anthonymuthu; Zachary E Hier; Yuan Gao; Valerian E Kagan; Hülya Bayır
Journal:  Exp Neurol       Date:  2020-04-11       Impact factor: 5.330

Review 7.  The role of key residues in structure, function, and stability of cytochrome-c.

Authors:  Sobia Zaidi; Md Imtaiyaz Hassan; Asimul Islam; Faizan Ahmad
Journal:  Cell Mol Life Sci       Date:  2013-04-25       Impact factor: 9.261

Review 8.  Cytochrome c/cardiolipin relations in mitochondria: a kiss of death.

Authors:  Valerian E Kagan; Hülya A Bayir; Natalia A Belikova; Olexandr Kapralov; Yulia Y Tyurina; Vladimir A Tyurin; Jianfei Jiang; Detcho A Stoyanovsky; Peter Wipf; Patrick M Kochanek; Joel S Greenberger; Bruce Pitt; Anna A Shvedova; Grigory Borisenko
Journal:  Free Radic Biol Med       Date:  2009-03-12       Impact factor: 7.376

9.  Investigations of the low-frequency spectral density of cytochrome c upon equilibrium unfolding.

Authors:  Yuhan Sun; Venugopal Karunakaran; Paul M Champion
Journal:  J Phys Chem B       Date:  2013-08-07       Impact factor: 2.991

10.  Nitration of solvent-exposed tyrosine 74 on cytochrome c triggers heme iron-methionine 80 bond disruption. Nuclear magnetic resonance and optical spectroscopy studies.

Authors:  Luciano A Abriata; Adriana Cassina; Verónica Tórtora; Mónica Marín; José M Souza; Laura Castro; Alejandro J Vila; Rafael Radi
Journal:  J Biol Chem       Date:  2008-10-29       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.