Literature DB >> 16875774

Coordination numbers of alkali metal ions in aqueous solutions.

Sameer Varma1, Susan B Rempe.   

Abstract

The level of complexity with which any biological ion interaction mechanism can be investigated, whether it is a binding mechanism in proteins or a permeation mechanism in ion channels, is invariably limited by the state-of-the-art of our understanding of the characteristic properties of ion solvation. Currently, our understanding of the energetic properties of ion solvation in aqueous phase is considered adequate enough to have helped us obtain satisfactory descriptions of the role of energetics in several biological ion interaction processes. In contrast, the lack of consensus among all the experimental structural hydration data determined more than 10 years ago, particularly regarding ion hydration numbers, has limited us to nothing better than speculation regarding the roles of local spatial environments in these mechanisms. Here we revisit experimental and theoretical work applied to probe hydration numbers of three alkali metal ions, Li(+), Na(+) and K(+), and analyze them to clarify the current state-of-the-art of our understanding of their structural hydration properties. We find that with substantial improvements over the past 10 years in areas of experimental techniques, data analysis strategies, and theoretical and computational approaches for interrogating ion hydration structures, there is now growing consensus regarding the hydration numbers of these ions. We see that under physiological conditions, ab initio methods suggest that all three ions prefer strong coordination with exactly 4 water molecules, a result we find consistent with some older experimental measurements. Ab initio molecular dynamics (AIMD) simulations invariably identify additional "loosely" coordinated water molecules at the far slopes of the principle maxima of the radial distribution profiles for Na(+) and K(+) ions. We suggest that these statistical admixtures of additional oxygen atoms have resulted in the most recent experimentally determined hydration numbers of Na(+) ions to be 5 and K(+) ions to be 6.

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Year:  2006        PMID: 16875774     DOI: 10.1016/j.bpc.2006.07.002

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  34 in total

1.  Coordination numbers of K(+) and Na(+) Ions inside the selectivity filter of the KcsA potassium channel: insights from first principles molecular dynamics.

Authors:  Denis Bucher; Leonardo Guidoni; Paolo Carloni; Ursula Rothlisberger
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Multibody effects in ion binding and selectivity.

Authors:  Sameer Varma; Susan B Rempe
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  The predominant role of coordination number in potassium channel selectivity.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

4.  Tuning a potassium channel--the caress of the surroundings.

Authors:  Peter C Jordan
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

5.  Tuning ion coordination architectures to enable selective partitioning.

Authors:  Sameer Varma; Susan B Rempe
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

6.  Steric selectivity in Na channels arising from protein polarization and mobile side chains.

Authors:  Dezso Boda; Wolfgang Nonner; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

7.  Ab initio molecular dynamics calculations of ion hydration free energies.

Authors:  Kevin Leung; Susan B Rempe; O Anatole von Lilienfeld
Journal:  J Chem Phys       Date:  2009-05-28       Impact factor: 3.488

Review 8.  IMP dehydrogenase: structure, mechanism, and inhibition.

Authors:  Lizbeth Hedstrom
Journal:  Chem Rev       Date:  2009-07       Impact factor: 60.622

9.  Structural transitions in ion coordination driven by changes in competition for ligand binding.

Authors:  Sameer Varma; Susan B Rempe
Journal:  J Am Chem Soc       Date:  2008-10-28       Impact factor: 15.419

10.  Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding.

Authors:  Amelia B Kreienkamp; Lucy Y Liu; Mona S Minkara; Matthew G Knepley; Jaydeep P Bardhan; Mala L Radhakrishnan
Journal:  Mol Based Math Biol       Date:  2013-06
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