Literature DB >> 16873122

Unusual origins of isotope effects in enzyme-catalysed reactions.

Dexter B Northrop1.   

Abstract

High hydrostatic pressure is a neglected tool for probing the origins of isotope effects. In chemical reactions, normal primary deuterium isotope effects (DIEs) arising solely from differences in zero point energies are unaffected by pressure; but some anomalous isotope effects in which hydrogen tunnelling is suspected are partially suppressed. In some enzymatic reactions, high pressure completely suppresses the DIE. We have now measured the effects of high pressure on the parallel 13C heavy atom isotope effect of yeast alcohol dehydrogenase and found that it is also suppressed by high pressure and, similarly, suppressed in its entirety. Moreover, the volume changes associated with the suppression of both deuterium and heavy atom isotope effects are virtually identical. The equivalent decrease in activation volumes for hydride transfer, when one mass unit is added to the carbon end of a scissile C-H bond as when one mass unit is added to the hydrogen end, suggests a common origin. Given that carbon is highly unlikely to undergo tunnelling, it follows that hydrogen is not doing so either. The origin of these isotope effects must lie elsewhere. We offer protein domain motions as a possibility.

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Year:  2006        PMID: 16873122      PMCID: PMC1647306          DOI: 10.1098/rstb.2006.1875

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  12 in total

1.  Effect of pressure on deuterium isotope effects of yeast alcohol dehydrogenase: evidence for mechanical models of catalysis.

Authors:  D B Northrop; Y K Cho
Journal:  Biochemistry       Date:  2000-03-07       Impact factor: 3.162

Review 2.  Effects of high pressure on enzymatic activity.

Authors:  Dexter B Northrop
Journal:  Biochim Biophys Acta       Date:  2002-03-25

3.  Metal stoichiometry, coenzyme binding, and zinc and cobalt enchange in highly purified yeast alcohol dehydrogenase.

Authors:  A J Sytkowski
Journal:  Arch Biochem Biophys       Date:  1977-12       Impact factor: 4.013

4.  Effects of pressure on the kinetics of capture by yeast alcohol dehydrogenase.

Authors:  Y K Cho; D B Northrop
Journal:  Biochemistry       Date:  1999-06-08       Impact factor: 3.162

Review 5.  Effects of pressure on deuterium isotope effects of yeast alcohol dehydrogenase using alternative substrates.

Authors:  Hyun Park; Gene Kidman; Dexter B Northrop
Journal:  Arch Biochem Biophys       Date:  2005-01-01       Impact factor: 4.013

6.  A large hinge bending domain rotation is necessary for the catalytic function of Escherichia coli 5'-nucleotidase.

Authors:  Robert Schultz-Heienbrok; Timm Maier; Norbert Sträter
Journal:  Biochemistry       Date:  2005-02-22       Impact factor: 3.162

7.  Effect of pressure on deuterium isotope effects of formate dehydrogenase.

Authors:  D J Quirk; D B Northrop
Journal:  Biochemistry       Date:  2001-01-23       Impact factor: 3.162

8.  Carbon tunneling from a single quantum state.

Authors:  Peter S Zuev; Robert S Sheridan; Titus V Albu; Donald G Truhlar; David A Hrovat; Weston Thatcher Borden
Journal:  Science       Date:  2003-02-07       Impact factor: 47.728

9.  Effect of pressure on a heavy-atom isotope effect of yeast alcohol dehydrogenase.

Authors:  Hyun Park; Gary G Girdaukas; Dexter B Northrop
Journal:  J Am Chem Soc       Date:  2006-02-15       Impact factor: 15.419

10.  Hydrogen tunneling in enzyme reactions.

Authors:  Y Cha; C J Murray; J P Klinman
Journal:  Science       Date:  1989-03-10       Impact factor: 47.728

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  3 in total

1.  Promoting motions in enzyme catalysis probed by pressure studies of kinetic isotope effects.

Authors:  Sam Hay; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-03       Impact factor: 11.205

Review 2.  Possible Mechanisms of Biological Effects Observed in Living Systems during 2H/1H Isotope Fractionation and Deuterium Interactions with Other Biogenic Isotopes.

Authors:  Alexander Basov; Liliya Fedulova; Ekaterina Vasilevskaya; Stepan Dzhimak
Journal:  Molecules       Date:  2019-11-13       Impact factor: 4.411

3.  Macromolecular crowding effects on the kinetics of opposing reactions catalyzed by alcohol dehydrogenase.

Authors:  Xander E Wilcox; Charmaine B Chung; Kristin M Slade
Journal:  Biochem Biophys Rep       Date:  2021-02-20
  3 in total

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