Literature DB >> 11170403

Effect of pressure on deuterium isotope effects of formate dehydrogenase.

D J Quirk1, D B Northrop.   

Abstract

High pressure causes biphasic effects on the oxidation of formate by yeast formate dehydrogenase as expressed on the kinetic parameter V/K, which measures substrate capture. Moderate pressure increases capture by accelerating hydride transfer. The transition state for hydride transfer has a smaller volume than the free formate plus the capturing form of enzyme, with DeltaV(double dagger) = -9.7 +/- 1.0 mL/mol. Pressures above 1.5 kbar decrease capture, reminiscent of effects on the conformational change associated with the binding of nicotinamide adenine dinucleotide (NAD(+)) to yeast alcohol dehydrogenase [Northrop, D. B., and Y. K. Cho (2000) Biochemistry 39, 2406-2412]. The collision complex, E-NAD(+), has a smaller volume than the more tightly bound reactant-state complex, E-NAD(+), with DeltaV = +83.4 +/- 5.2 mL/mol. A comparison of the effects of pressure on the oxidation of normal and deuteroformate shows that the entire isotope effect on hydride transfer, 2.73 +/- 0.20, arises solely from transition-state phenomena, as was also observed previously with yeast alcohol dehydrogense. In contrast, normal primary isotope effects arise solely from different zero-point energies in reactant states, and those that express hydrogen tunneling arise from a mixture of both reactant-state and transition-state phenomena. Moreover, pressure increases the primary intrinsic deuterium isotope effect, the opposite of what was observed with yeast alcohol dehydrogense. The lack of a decrease in the isotope effect is also contrary to empirical precedents from chemical reactions suspected of tunneling and to theoretical constructs of vibrationally enhanced tunneling in enzymatic reactions. Hence, this new experimental design penetrates transition states of enzymatic catalysis as never before, reveals the presence of phenomena foreign to chemical kinetics, and calls for explanations of how enzymes work beyond the tenants of physical organic chemistry.

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Year:  2001        PMID: 11170403     DOI: 10.1021/bi001991w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  4 in total

1.  Unusual origins of isotope effects in enzyme-catalysed reactions.

Authors:  Dexter B Northrop
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

2.  Structural and Kinetic Studies of Formate Dehydrogenase from Candida boidinii.

Authors:  Qi Guo; Lokesh Gakhar; Kyle Wickersham; Kevin Francis; Alexandra Vardi-Kilshtain; Dan T Major; Christopher M Cheatum; Amnon Kohen
Journal:  Biochemistry       Date:  2016-05-03       Impact factor: 3.162

3.  Oscillatory Active-site Motions Correlate with Kinetic Isotope Effects in Formate Dehydrogenase.

Authors:  Philip Pagano; Qi Guo; Chethya Ranasinghe; Evan Schroeder; Kevin Robben; Florian Häse; Hepeng Ye; Kyle Wickersham; Alán Aspuru-Guzik; Dan T Major; Lokesh Gakhar; Amnon Kohen; Christopher M Cheatum
Journal:  ACS Catal       Date:  2019-10-25       Impact factor: 13.084

4.  Promoting motions in enzyme catalysis probed by pressure studies of kinetic isotope effects.

Authors:  Sam Hay; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-03       Impact factor: 11.205

  4 in total

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