Literature DB >> 16862133

A unique and universal molecular barcode array.

Sarah E Pierce1, Eula L Fung, Daniel F Jaramillo, Angela M Chu, Ronald W Davis, Corey Nislow, Guri Giaever.   

Abstract

Molecular barcode arrays allow the analysis of thousands of biological samples in parallel through the use of unique 20-base-pair (bp) DNA tags. Here we present a new barcode array, which is unique among microarrays in that it includes at least five replicates of every tag feature. The use of smaller dispersed replicate features dramatically improves performance versus a single larger feature and allows the correction of previously undetectable hybridization defects.

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Year:  2006        PMID: 16862133     DOI: 10.1038/nmeth905

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  49 in total

1.  Multiplex identification of microbes.

Authors:  Richard W Hyman; Robert P St Onge; Edward A Allen; Molly Miranda; Ana Maria Aparicio; Marilyn Fukushima; Ronald W Davis
Journal:  Appl Environ Microbiol       Date:  2010-04-23       Impact factor: 4.792

2.  Design of 240,000 orthogonal 25mer DNA barcode probes.

Authors:  Qikai Xu; Michael R Schlabach; Gregory J Hannon; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-26       Impact factor: 11.205

3.  Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.

Authors:  Dong-Uk Kim; Jacqueline Hayles; Dongsup Kim; Valerie Wood; Han-Oh Park; Misun Won; Hyang-Sook Yoo; Trevor Duhig; Miyoung Nam; Georgia Palmer; Sangjo Han; Linda Jeffery; Seung-Tae Baek; Hyemi Lee; Young Sam Shim; Minho Lee; Lila Kim; Kyung-Sun Heo; Eun Joo Noh; Ah-Reum Lee; Young-Joo Jang; Kyung-Sook Chung; Shin-Jung Choi; Jo-Young Park; Youngwoo Park; Hwan Mook Kim; Song-Kyu Park; Hae-Joon Park; Eun-Jung Kang; Hyong Bai Kim; Hyun-Sam Kang; Hee-Moon Park; Kyunghoon Kim; Kiwon Song; Kyung Bin Song; Paul Nurse; Kwang-Lae Hoe
Journal:  Nat Biotechnol       Date:  2010-05-16       Impact factor: 54.908

4.  Quantitative phenotyping via deep barcode sequencing.

Authors:  Andrew M Smith; Lawrence E Heisler; Joseph Mellor; Fiona Kaper; Michael J Thompson; Mark Chee; Frederick P Roth; Guri Giaever; Corey Nislow
Journal:  Genome Res       Date:  2009-07-21       Impact factor: 9.043

Review 5.  The incredible shrinking world of DNA microarrays.

Authors:  Sarah J Wheelan; Francisco Martínez Murillo; Jef D Boeke
Journal:  Mol Biosyst       Date:  2008-04-17

6.  Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection.

Authors:  Errett C Hobbs; Jillian L Astarita; Gisela Storz
Journal:  J Bacteriol       Date:  2010-01       Impact factor: 3.490

7.  Combining chemical genomics screens in yeast to reveal spectrum of effects of chemical inhibition of sphingolipid biosynthesis.

Authors:  Danielle Kemmer; Lianne M McHardy; Shawn Hoon; Delphine Rebérioux; Guri Giaever; Corey Nislow; Calvin D Roskelley; Michel Roberge
Journal:  BMC Microbiol       Date:  2009-01-14       Impact factor: 3.605

8.  Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection.

Authors:  Julia Oh; Eula Fung; Ulrich Schlecht; Ronald W Davis; Guri Giaever; Robert P St Onge; Adam Deutschbauer; Corey Nislow
Journal:  PLoS Pathog       Date:  2010-10-07       Impact factor: 6.823

9.  A universal TagModule collection for parallel genetic analysis of microorganisms.

Authors:  Julia Oh; Eula Fung; Morgan N Price; Paramvir S Dehal; Ronald W Davis; Guri Giaever; Corey Nislow; Adam P Arkin; Adam Deutschbauer
Journal:  Nucleic Acids Res       Date:  2010-05-21       Impact factor: 16.971

10.  A comparative analysis of DNA barcode microarray feature size.

Authors:  Ron Ammar; Andrew M Smith; Lawrence E Heisler; Guri Giaever; Corey Nislow
Journal:  BMC Genomics       Date:  2009-10-13       Impact factor: 3.969

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